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Mutant Information

Mutant Name	FN1673-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1673-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28822695	G-A	HET
SBS	Chr1	41882440	C-A	Homo
SBS	Chr1	4726471	A-G	Homo
SBS	Chr10	14484236	T-A	HET
SBS	Chr10	6273699	T-C	HET
SBS	Chr10	7102613	C-T	HET
SBS	Chr10	9478117	A-G	HET
SBS	Chr10	9616775	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18870
SBS	Chr11	22325834	A-T	HET
SBS	Chr11	25325916	C-T	HET
SBS	Chr11	4630666	A-C	Homo
SBS	Chr12	15369562	G-A	HET
SBS	Chr12	20056351	G-C	HET
SBS	Chr12	9861313	G-C	Homo
SBS	Chr2	3435837	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g06810
SBS	Chr2	7752463	C-T	Homo
SBS	Chr3	11767528	T-C	Homo
SBS	Chr3	27624294	G-A	HET
SBS	Chr3	30604640	A-G	HET
SBS	Chr4	29288240	A-T	HET
SBS	Chr4	33844670	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56740
SBS	Chr4	4590964	G-C	HET
SBS	Chr4	4909660	C-T	HET
SBS	Chr5	10481370	C-T	HET
SBS	Chr5	1698941	G-A	Homo
SBS	Chr5	4794471	C-T	HET
SBS	Chr7	28169912	G-A	Homo
SBS	Chr7	5070103	G-A	HET
SBS	Chr7	9832506	A-T	HET
SBS	Chr8	18648931	G-T	Homo
SBS	Chr8	18816420	C-T	HET
SBS	Chr9	3814981	T-A	HET
SBS	Chr9	9473036	T-C	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	154635	154636	1
Deletion	Chr8	667393	667394	1
Deletion	Chr9	3422019	3422020	1	LOC_Os09g07060
Deletion	Chr5	4182262	4182263	1	LOC_Os05g07764
Deletion	Chr6	6019131	6019139	8
Deletion	Chr6	11413627	11413628	1	LOC_Os06g19930
Deletion	Chr3	13731594	13731597	3	LOC_Os03g24180
Deletion	Chr12	15242005	15242007	2
Deletion	Chr4	17592734	17592735	1
Deletion	Chr3	18031048	18031058	10
Deletion	Chr8	26811510	26811519	9
Deletion	Chr7	29084931	29084932	1	LOC_Os07g48580
Deletion	Chr6	29844888	29844889	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	13395688	13395691	4
Insertion	Chr5	9946640	9946640	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22792394	23122800	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2922973	Chr1	2101334
Translocation	Chr5	8428043	Chr1	23528716	LOC_Os05g14820
Translocation	Chr10	15469281	Chr1	22308720

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