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Mutant Information

Mutant Name	FN1674-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1674-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7733737	C-A	HET
SBS	Chr1	39559333	C-T	HET
SBS	Chr2	12833640	G-A	HET
SBS	Chr2	14693630	A-G	HET
SBS	Chr2	35073305	C-A	Homo
SBS	Chr3	17319480	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30370
SBS	Chr4	1973077	T-A	Homo
SBS	Chr4	11112479	G-A	Homo
SBS	Chr4	23664046	C-T	Homo
SBS	Chr4	34829683	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58580
SBS	Chr7	6120400	A-G	Homo
SBS	Chr7	24569108	A-C	HET
SBS	Chr8	2983294	A-T	HET
SBS	Chr8	4291613	A-T	HET
SBS	Chr8	8274837	G-A	HET
SBS	Chr9	14633705	C-T	Homo
SBS	Chr11	158192	T-G	HET
SBS	Chr11	9271414	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g16730
SBS	Chr11	17006177	C-T	HET

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1934754	1934755	1
Deletion	Chr9	2440769	2440771	2
Deletion	Chr7	10377186	10377187	1
Deletion	Chr8	12472642	12472645	3	LOC_Os08g20770
Deletion	Chr3	19479407	19479408	1
Deletion	Chr2	25307897	25307983	86
Deletion	Chr3	26295885	26295886	1
Deletion	Chr11	27700601	27700607	6
Deletion	Chr3	28461453	28461454	1	LOC_Os03g49910
Deletion	Chr2	31600917	31600918	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13626417	13626417	1	LOC_Os01g24180
Insertion	Chr1	40308970	40308970	1	LOC_Os01g69810
Insertion	Chr3	22607473	22607487	15
Insertion	Chr5	17231398	17231398	1
Insertion	Chr5	18823133	18823133	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	22077566	22335406	2
Inversion	Chr7	22077575	22335412	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1692336	Chr5	26157973
Translocation	Chr8	7208234	Chr1	4835389	LOC_Os08g12250
Translocation	Chr8	7209438	Chr1	4835375
Translocation	Chr9	13579759	Chr4	32799921
Translocation	Chr11	18032499	Chr7	21174060