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Mutant Information

Mutant Name	FN1675-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1675-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11123062	T-C	Homo
SBS	Chr1	13410720	G-A	HET
SBS	Chr1	2549452	C-T	Homo
SBS	Chr10	1095189	T-C	HET
SBS	Chr10	18307964	G-A	HET
SBS	Chr10	8441129	C-G	HET
SBS	Chr11	10379172	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g18382
SBS	Chr11	18617774	G-T	Homo
SBS	Chr11	8252707	C-G	HET
SBS	Chr2	15857991	G-T	Homo
SBS	Chr2	20017975	G-A	Homo
SBS	Chr2	28892913	C-T	Homo
SBS	Chr2	31840754	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g52010
SBS	Chr3	6805782	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g12730
SBS	Chr4	22710374	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g38160
SBS	Chr4	31317162	T-C	HET
SBS	Chr4	4205110	G-T	Homo
SBS	Chr4	4205111	C-T	Homo
SBS	Chr5	2592313	A-G	Homo
SBS	Chr6	19552656	C-T	HET
SBS	Chr6	19852834	G-A	HET
SBS	Chr6	2349528	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05230
SBS	Chr6	9413862	G-A	HET
SBS	Chr6	9413863	C-T	HET
SBS	Chr7	15078794	T-A	HET
SBS	Chr8	23425091	G-A	HET
SBS	Chr9	5365438	T-G	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3104791	3104793	2
Deletion	Chr6	11799405	11799406	1
Deletion	Chr6	14830001	14959000	128999	21
Deletion	Chr6	14971001	15076000	104999	21
Deletion	Chr8	17868834	17868836	2
Deletion	Chr3	19443001	19464000	20999	6
Deletion	Chr1	19493984	19493986	2
Deletion	Chr6	19563001	19623000	59999	11
Deletion	Chr1	25908258	25908260	2
Deletion	Chr5	25958001	25985000	26999	7
Deletion	Chr5	26015001	26266000	250999	51
Deletion	Chr5	26269001	26365000	95999	18
Deletion	Chr3	32576738	32576739	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11114415	11114415	1
Insertion	Chr11	13493795	13493795	1
Insertion	Chr4	10516215	10516215	1	LOC_Os04g18910
Insertion	Chr4	3903077	3903077	1
Insertion	Chr7	9903210	9903210	1
Insertion	Chr8	5022341	5022343	3
Insertion	Chr8	6945205	6945205	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7229324	7457437	LOC_Os08g12280
Inversion	Chr1	13481437	13481850	LOC_Os01g23960
Inversion	Chr9	16371508	16371866
Inversion	Chr5	17747157	18146585
Inversion	Chr6	19623967	19997981
Inversion	Chr6	19624463	19842432	2
Inversion	Chr3	32077467	32238260	2
Inversion	Chr3	32077485	32238265	2

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1930158	Chr4	25011835
Translocation	Chr11	1930500	Chr4	25011834
Translocation	Chr10	3761462	Chr2	17525907	LOC_Os10g07160
Translocation	Chr5	7269477	Chr3	19922722	LOC_Os05g12660
Translocation	Chr7	7319153	Chr5	26011591	2
Translocation	Chr9	9016527	Chr7	28474575	2
Translocation	Chr9	9016539	Chr7	28473838	2
Translocation	Chr3	14255790	Chr2	17025208	2
Translocation	Chr6	17871915	Chr2	11966173	2
Translocation	Chr4	17926761	Chr3	9616514
Translocation	Chr3	19964935	Chr1	40083673	LOC_Os03g35990
Translocation	Chr10	20572652	Chr1	41377868
Translocation	Chr7	23329929	Chr5	26011591	2
Translocation	Chr7	23329955	Chr5	26011789	2

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