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Mutant Information

Mutant Name	FN1677-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1677-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24502428	T-C	HET
SBS	Chr10	13964478	G-C	HET
SBS	Chr10	5268249	A-T	HET
SBS	Chr11	13826884	C-A	HET
SBS	Chr2	21838376	C-T	HET
SBS	Chr3	26515208	A-T	Homo
SBS	Chr3	26515209	A-T	Homo
SBS	Chr3	9943044	C-T	Homo
SBS	Chr5	18260672	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g31400
SBS	Chr5	23935384	T-C	HET
SBS	Chr6	15524044	G-A	Homo
SBS	Chr7	1139147	G-A	HET
SBS	Chr8	21422967	A-G	HET
SBS	Chr9	20374238	T-C	HET
SBS	Chr9	22897682	G-A	HET
SBS	Chr9	6546439	A-C	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2373001	2384000	10999	2
Deletion	Chr8	2797008	2797338	330
Deletion	Chr3	4745751	4745753	2
Deletion	Chr4	7019219	7019220	1
Deletion	Chr7	7781417	7781421	4
Deletion	Chr8	14024001	14040000	15999	4
Deletion	Chr4	16981874	16981877	3
Deletion	Chr5	17193730	17194131	401
Deletion	Chr4	18705832	18705840	8
Deletion	Chr9	18829001	18869000	39999	7
Deletion	Chr9	18914639	18914641	2
Deletion	Chr3	28910880	28910881	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29372464	29372464	1
Insertion	Chr12	10662923	10662923	1
Insertion	Chr3	3904325	3904326	2
Insertion	Chr7	10245932	10245932	1
Insertion	Chr7	21016377	21016377	1
Insertion	Chr8	8901349	8901350	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8125471	8586745
Inversion	Chr11	8125489	8586748
Inversion	Chr8	8729230	8729838
Inversion	Chr4	16353222	16353502	LOC_Os04g27670
Inversion	Chr2	33878779	34280044	LOC_Os02g55330
Inversion	Chr2	33878795	34280053	LOC_Os02g55330

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1478755	Chr2	15314978	LOC_Os04g03440
Translocation	Chr12	1631203	Chr2	7697932	2
Translocation	Chr12	9699155	Chr4	13186163
Translocation	Chr9	15055652	Chr2	25552323
Translocation	Chr2	20308711	Chr1	23354365
Translocation	Chr2	20309180	Chr1	23354345
Translocation	Chr6	26920545	Chr4	11757166	2
Translocation	Chr5	27467343	Chr3	35721663