Search Results

Mutant Information

Mutant Name	FN1678-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1678-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15894342	A-T	Homo
SBS	Chr1	36623301	T-C	HET
SBS	Chr2	5601268	T-C	HET
SBS	Chr2	13215596	C-T	Homo
SBS	Chr4	7040184	G-A	HET
SBS	Chr5	8619562	C-A	HET
SBS	Chr7	12102637	C-G	HET
SBS	Chr7	14013103	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24630
SBS	Chr7	21525558	A-C	HET
SBS	Chr8	11535452	T-C	HET
SBS	Chr9	6900597	G-A	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7634001	7653000	18999	5
Deletion	Chr9	9776612	9776617	5
Deletion	Chr2	10020001	10037000	16999	3
Deletion	Chr6	10986253	10986255	2
Deletion	Chr3	13100385	13100400	15
Deletion	Chr8	18488907	18488909	2
Deletion	Chr9	18572911	18572915	4
Deletion	Chr2	21353744	21353745	1
Deletion	Chr6	24164740	24164741	1
Deletion	Chr12	25966951	25966956	5
Deletion	Chr12	27414990	27415311	321
Deletion	Chr3	29648360	29648362	2
Deletion	Chr3	33387513	33387521	8

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	29396167	29396168	2
Insertion	Chr1	24738973	24738984	12
Insertion	Chr1	29173556	29173556	1
Insertion	Chr2	15372618	15372620	3
Insertion	Chr3	8317499	8317499	1
Insertion	Chr4	5447379	5447379	1
Insertion	Chr4	15715312	15715312	1
Insertion	Chr6	25225861	25225861	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16580113	16580435
Inversion	Chr10	19631345	19687900	2
Inversion	Chr10	19631363	19687907	2
Inversion	Chr9	21096544	21096660
Inversion	Chr2	23552237	23552583	LOC_Os02g38980
Inversion	Chr3	24870380	24870788

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5767637	Chr1	6544940
Translocation	Chr9	14531581	Chr6	15056131	2
Translocation	Chr9	14537495	Chr6	15056126	2
Translocation	Chr8	20645497	Chr7	1745293	2