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Mutant Information

Mutant Name	FN1680-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1680-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28238740	C-T	HET
SBS	Chr1	34021115	C-T	HET
SBS	Chr1	35719501	G-A	HET
SBS	Chr1	8730591	T-A	HET
SBS	Chr10	16866461	G-T	Homo
SBS	Chr11	13925178	G-T	HET
SBS	Chr11	4363704	A-T	HET
SBS	Chr12	11954397	A-T	Homo
SBS	Chr12	22477118	G-A	Homo
SBS	Chr2	17908923	G-T	HET
SBS	Chr4	15029845	A-G	HET
SBS	Chr4	30843747	T-A	Homo
SBS	Chr4	30843748	C-A	Homo
SBS	Chr4	30843749	T-A	Homo
SBS	Chr5	21463281	T-G	HET
SBS	Chr6	4064207	G-A	Homo
SBS	Chr6	7852831	C-T	HET
SBS	Chr6	7852832	A-T	HET
SBS	Chr7	19719253	C-T	Homo
SBS	Chr7	20756646	C-A	HET
SBS	Chr8	3327053	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g06090
SBS	Chr8	3327057	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g06090
SBS	Chr9	14308998	G-A	HET
SBS	Chr9	9078997	T-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1306374	1306379	5
Deletion	Chr10	2749035	2749037	2
Deletion	Chr11	3715804	3715811	7	LOC_Os11g07380
Deletion	Chr4	5406611	5406612	1
Deletion	Chr7	9755762	9755766	4
Deletion	Chr4	15251727	15251731	4
Deletion	Chr7	21829041	21829043	2
Deletion	Chr12	23306904	23306915	11
Deletion	Chr11	24906109	24906114	5
Deletion	Chr6	29487225	29487233	8
Deletion	Chr6	30471544	30471550	6
Deletion	Chr1	30772735	30772742	7	LOC_Os01g53590
Deletion	Chr2	34310324	34310326	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23070331	23070332	2
Insertion	Chr10	16605988	16605988	1
Insertion	Chr4	16490000	16490070	71	LOC_Os04g27930
Insertion	Chr4	32167796	32167801	6	LOC_Os04g53990
Insertion	Chr4	7914471	7914479	9	LOC_Os04g14150
Insertion	Chr6	30884956	30884957	2
Insertion	Chr7	21018619	21018619	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	31	Chr1	1116
Translocation	Chr6	19203643	Chr3	29982750

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