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Mutant Information

Mutant Name	FN1682-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1682-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9698984	G-A	Homo
SBS	Chr1	15522155	C-G	HET
SBS	Chr1	20067010	C-G	Homo
SBS	Chr1	36553653	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63080
SBS	Chr2	7398698	A-T	HET
SBS	Chr2	15745078	T-A	HET
SBS	Chr2	21516441	G-A	HET
SBS	Chr2	35730277	G-A	HET
SBS	Chr3	27042018	G-C	HET
SBS	Chr3	34610581	C-A	HET	STOP_GAINED	LOC_Os03g60910
SBS	Chr4	22189773	G-A	HET
SBS	Chr4	25464346	C-A	HET
SBS	Chr4	29757853	G-A	HET
SBS	Chr5	11756860	A-T	Homo
SBS	Chr7	2944810	G-A	HET
SBS	Chr7	28433068	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g47530
SBS	Chr9	7032672	T-A	Homo
SBS	Chr9	12084427	G-A	HET
SBS	Chr9	17863237	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g29404
SBS	Chr10	949666	T-G	Homo
SBS	Chr10	5660099	T-C	HET
SBS	Chr10	10682534	A-T	HET
SBS	Chr10	11494534	C-T	HET
SBS	Chr11	5804643	G-T	HET	STOP_GAINED	LOC_Os11g10580
SBS	Chr11	5991981	C-T	HET
SBS	Chr11	16432706	G-T	HET
SBS	Chr11	24327170	A-T	Homo
SBS	Chr11	26033199	C-T	Homo
SBS	Chr11	26424943	T-G	Homo
SBS	Chr11	27588440	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45580
SBS	Chr12	9988447	G-A	HET
SBS	Chr12	10996862	G-T	HET
SBS	Chr12	10996863	C-T	HET
SBS	Chr12	16374022	A-T	HET
SBS	Chr12	19197557	T-C	HET
SBS	Chr12	19777964	G-A	HET
SBS	Chr12	24231420	A-G	HET
SBS	Chr12	25414268	A-T	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	746105	746121	16
Deletion	Chr10	1625187	1625191	4
Deletion	Chr8	3553920	3553923	3
Deletion	Chr5	4212145	4212159	14
Deletion	Chr7	4683996	4683998	2
Deletion	Chr4	4915244	4915246	2
Deletion	Chr3	8909001	8942000	32999	7
Deletion	Chr1	9296890	9296893	3	LOC_Os01g16370
Deletion	Chr12	9950956	9950958	2
Deletion	Chr7	10725481	10725490	9
Deletion	Chr8	13520538	13520539	1
Deletion	Chr9	14481174	14481178	4
Deletion	Chr9	15601872	15601881	9
Deletion	Chr2	15745173	15745174	1
Deletion	Chr2	16421350	16421352	2	LOC_Os02g27720
Deletion	Chr3	17450717	17450718	1
Deletion	Chr9	19573408	19573409	1
Deletion	Chr10	21034001	21061000	26999	5
Deletion	Chr10	21063001	21199000	135999	17
Deletion	Chr4	24074815	24074816	1
Deletion	Chr3	24939591	24939604	13
Deletion	Chr4	30807297	30807300	3
Deletion	Chr3	33225141	33225147	6
Deletion	Chr1	36614284	36614288	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14946944	14946946	3
Insertion	Chr5	7628432	7628432	1
Insertion	Chr6	23699229	23699229	1
Insertion	Chr11	23694090	23694090	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20766748	20982853
Inversion	Chr10	20766768	21199355
Inversion	Chr1	42484912	42485149	LOC_Os01g73310

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4407685	Chr8	25425640
Translocation	Chr4	21173657	Chr3	15660893	2
Translocation	Chr9	21574171	Chr1	31269042

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