Search Nipponbare

Mutant Information

Mutant Name	FN1685-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1685-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33436845	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57810
SBS	Chr1	5471281	G-A	HET
SBS	Chr1	5471282	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g10390
SBS	Chr11	23402606	T-C	HET
SBS	Chr12	11333335	C-G	HET
SBS	Chr12	1581585	G-A	HET
SBS	Chr12	16730583	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28290
SBS	Chr12	3902740	G-A	HET
SBS	Chr2	29754800	G-T	HET
SBS	Chr2	8278734	G-A	HET
SBS	Chr3	16933776	A-G	HET
SBS	Chr3	3032084	T-A	HET
SBS	Chr3	30554146	A-G	HET
SBS	Chr3	35490320	A-T	HET
SBS	Chr4	15404558	A-G	HET
SBS	Chr4	2125955	C-T	HET
SBS	Chr4	23923775	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g40210
SBS	Chr4	33432018	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56140
SBS	Chr5	10492031	C-T	Homo
SBS	Chr5	11406703	A-G	HET
SBS	Chr5	3444666	T-C	HET
SBS	Chr6	27964030	A-C	HET
SBS	Chr6	28092340	A-G	HET
SBS	Chr6	28341322	G-A	HET
SBS	Chr6	29719473	C-T	HET
SBS	Chr7	16770342	C-T	HET
SBS	Chr7	23798865	T-C	HET
SBS	Chr7	27576931	A-T	HET
SBS	Chr7	29153524	T-A	HET
SBS	Chr7	4836439	G-T	HET
SBS	Chr7	8113450	C-T	HET
SBS	Chr8	137802	A-T	HET
SBS	Chr8	25008761	C-A	HET
SBS	Chr9	7362807	C-T	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	618067	618073	6
Deletion	Chr10	630690	630700	10
Deletion	Chr10	1825338	1825341	3
Deletion	Chr3	2626127	2626134	7
Deletion	Chr4	6883935	6883936	1
Deletion	Chr10	9843947	9843952	5
Deletion	Chr5	15084249	15084253	4
Deletion	Chr4	17463186	17463187	1
Deletion	Chr8	21566307	21566314	7
Deletion	Chr5	23110304	23110307	3
Deletion	Chr2	25196507	25196513	6	LOC_Os02g41930
Deletion	Chr3	29035558	29035559	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	23031558	23031579	22
Insertion	Chr2	11921926	11921926	1
Insertion	Chr2	4958981	4958983	3	LOC_Os02g09650
Insertion	Chr5	22164785	22164786	2
Insertion	Chr5	29648206	29648229	24

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2216683	2216788
Inversion	Chr3	18154855	18155051	LOC_Os03g31750
Inversion	Chr1	30509793	30965688
Inversion	Chr1	30509822	30965867

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	10134117	Chr1	7229198
Translocation	Chr10	12966546	Chr6	23216706
Translocation	Chr10	12966582	Chr6	23180980
Translocation	Chr10	18904769	Chr7	27173080	2
Translocation	Chr10	18909373	Chr7	27173082	2
Translocation	Chr6	20679420	Chr1	14140890
Translocation	Chr12	26916667	Chr3	4267913	2

Main menu