Search Results
Mutant Information |
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Mutant Name | FN1685-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1685-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 5471281 | G-A | HET | ||
SBS | Chr1 | 5471282 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g10390 |
SBS | Chr1 | 33436845 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g57810 |
SBS | Chr2 | 8278734 | G-A | HET | ||
SBS | Chr2 | 29754800 | G-T | HET | ||
SBS | Chr3 | 3032084 | T-A | HET | ||
SBS | Chr3 | 16933776 | A-G | HET | ||
SBS | Chr3 | 30554146 | A-G | HET | ||
SBS | Chr3 | 35490320 | A-T | HET | ||
SBS | Chr4 | 2125955 | C-T | HET | ||
SBS | Chr4 | 15404558 | A-G | HET | ||
SBS | Chr4 | 23923775 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g40210 |
SBS | Chr4 | 33432018 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g56140 |
SBS | Chr5 | 3444666 | T-C | HET | ||
SBS | Chr5 | 10492031 | C-T | Homo | ||
SBS | Chr5 | 11406703 | A-G | HET | ||
SBS | Chr6 | 27964030 | A-C | HET | ||
SBS | Chr6 | 28092340 | A-G | HET | ||
SBS | Chr6 | 28341322 | G-A | HET | ||
SBS | Chr6 | 29719473 | C-T | HET | ||
SBS | Chr7 | 4836439 | G-T | HET | ||
SBS | Chr7 | 8113450 | C-T | HET | ||
SBS | Chr7 | 16770342 | C-T | HET | ||
SBS | Chr7 | 23798865 | T-C | HET | ||
SBS | Chr7 | 27576931 | A-T | HET | ||
SBS | Chr7 | 29153524 | T-A | HET | ||
SBS | Chr8 | 137802 | A-T | HET | ||
SBS | Chr8 | 25008761 | C-A | HET | ||
SBS | Chr9 | 7362807 | C-T | HET | ||
SBS | Chr11 | 23402606 | T-C | HET | ||
SBS | Chr12 | 1581585 | G-A | HET | ||
SBS | Chr12 | 3902740 | G-A | HET | ||
SBS | Chr12 | 11333335 | C-G | HET | ||
SBS | Chr12 | 16730583 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28290 |
Deletions: 12
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 618067 | 618073 | 6 | |
Deletion | Chr10 | 630690 | 630700 | 10 | |
Deletion | Chr10 | 1825338 | 1825341 | 3 | |
Deletion | Chr3 | 2626127 | 2626134 | 7 | |
Deletion | Chr4 | 6883935 | 6883936 | 1 | |
Deletion | Chr10 | 9843947 | 9843952 | 5 | |
Deletion | Chr5 | 15084249 | 15084253 | 4 | |
Deletion | Chr4 | 17463186 | 17463187 | 1 | |
Deletion | Chr8 | 21566307 | 21566314 | 7 | |
Deletion | Chr5 | 23110304 | 23110307 | 3 | |
Deletion | Chr2 | 25196507 | 25196513 | 6 | LOC_Os02g41930 |
Deletion | Chr3 | 29035558 | 29035559 | 1 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 22164785 | 22164786 | 2 | |
Insertion | Chr2 | 4958981 | 4958983 | 3 | LOC_Os02g09650 |
Insertion | Chr2 | 11921926 | 11921926 | 1 | |
Insertion | Chr5 | 29648206 | 29648229 | 24 | |
Insertion | Chr11 | 23031558 | 23031579 | 22 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 2216683 | 2216788 | |
Inversion | Chr3 | 18154855 | 18155051 | LOC_Os03g31750 |
Inversion | Chr1 | 30509793 | 30965688 | |
Inversion | Chr1 | 30509822 | 30965867 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 10134117 | Chr1 | 7229198 | |
Translocation | Chr10 | 12966546 | Chr6 | 23216706 | |
Translocation | Chr10 | 12966582 | Chr6 | 23180980 | |
Translocation | Chr10 | 18904769 | Chr7 | 27173080 | 2 |
Translocation | Chr10 | 18909373 | Chr7 | 27173082 | 2 |
Translocation | Chr6 | 20679420 | Chr1 | 14140890 | |
Translocation | Chr12 | 26916667 | Chr3 | 4267913 | 2 |