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Mutant Information

Mutant Name	FN1687-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1687-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42432788	G-T	HET
SBS	Chr2	19731330	T-C	HET
SBS	Chr2	22578662	T-A	HET
SBS	Chr2	22578663	C-A	HET
SBS	Chr3	15094405	C-T	HET
SBS	Chr3	20098964	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36239
SBS	Chr3	29642638	G-A	Homo
SBS	Chr4	16820297	A-G	HET
SBS	Chr5	1876793	T-C	HET
SBS	Chr5	6075717	A-G	HET
SBS	Chr6	7370931	A-G	Homo
SBS	Chr6	22968830	T-A	Homo
SBS	Chr7	4239555	C-T	HET
SBS	Chr8	3048443	C-G	HET
SBS	Chr8	23485989	A-T	HET
SBS	Chr9	8864101	T-C	HET
SBS	Chr9	11224402	G-C	Homo
SBS	Chr10	9008793	G-C	HET
SBS	Chr10	14244659	T-A	HET
SBS	Chr10	15088067	G-T	HET
SBS	Chr10	22343670	T-C	HET
SBS	Chr11	4554506	G-A	HET
SBS	Chr11	7957205	G-A	HET
SBS	Chr12	8638802	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15140
SBS	Chr12	14506743	G-A	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2514215	2514220	5
Deletion	Chr9	3424058	3424059	1
Deletion	Chr8	3430050	3430055	5
Deletion	Chr8	3777358	3777360	2
Deletion	Chr8	3925752	3925757	5
Deletion	Chr4	6150854	6150863	9
Deletion	Chr7	11373001	11391000	17999	4
Deletion	Chr11	21105137	21105138	1
Deletion	Chr10	21340074	21340075	1
Deletion	Chr3	25749431	25749433	2
Deletion	Chr4	29778135	29778145	10	LOC_Os04g49930

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	1775757	1775757	1
Insertion	Chr8	9708808	9708809	2
Insertion	Chr10	14578121	14578123	3	LOC_Os10g28070
Insertion	Chr8	13388316	13388318	3
Insertion	Chr10	1483726	1483727	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8327546	8341256
Inversion	Chr12	8327549	8341255
Inversion	Chr7	11175160	11372597	2
Inversion	Chr7	11175176	11392030	LOC_Os07g18874
Inversion	Chr7	24814126	24844535
Inversion	Chr7	24844564	25547417

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7796879	Chr3	28085959	2
Translocation	Chr12	7797244	Chr3	28085971	2
Translocation	Chr12	8278600	Chr8	16667888	LOC_Os12g14500
Translocation	Chr7	11372608	Chr2	25148008	2
Translocation	Chr7	11372720	Chr2	25148079	2
Translocation	Chr3	35579707	Chr1	23075282	2

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