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Mutant Information

Mutant Name	FN1688-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1688-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	723072	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g02290
SBS	Chr10	12378243	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g24160
SBS	Chr10	4044443	G-T	Homo
SBS	Chr11	10667584	G-A	Homo	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	11157493	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g19400
SBS	Chr11	11157494	C-A	HET	STOP_GAINED	LOC_Os11g19400
SBS	Chr11	2964000	G-A	HET
SBS	Chr11	5366296	C-G	HET
SBS	Chr11	5366297	T-A	HET
SBS	Chr2	17724778	G-A	Homo
SBS	Chr2	32568860	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53200
SBS	Chr2	5358135	C-T	HET
SBS	Chr4	11267763	T-A	HET
SBS	Chr4	16395776	C-A	HET
SBS	Chr4	17145082	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g28920
SBS	Chr4	23095280	C-A	HET
SBS	Chr4	33299498	T-C	HET
SBS	Chr5	23691738	G-A	HET
SBS	Chr6	19830610	T-A	Homo
SBS	Chr6	27935055	A-T	HET
SBS	Chr6	27940488	G-C	HET
SBS	Chr6	31117763	G-C	HET
SBS	Chr6	9932238	G-T	HET
SBS	Chr7	16118449	G-A	Homo
SBS	Chr7	9864602	C-T	HET
SBS	Chr8	636823	A-T	Homo
SBS	Chr9	9236679	G-C	Homo

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	5514393	5514401	8	LOC_Os08g09510
Deletion	Chr6	8333545	8333546	1
Deletion	Chr7	15792001	15804000	11999	LOC_Os07g27200
Deletion	Chr7	17374086	17374100	14
Deletion	Chr9	21660282	21660285	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11493668	11493668	1
Insertion	Chr10	7673651	7673651	1
Insertion	Chr12	22240886	22240886	1
Insertion	Chr4	2884769	2884769	1
Insertion	Chr7	17075242	17075242	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	34157505	34157781	LOC_Os04g57400

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3297314	Chr2	9053972	2
Translocation	Chr5	3297317	Chr2	9050463	LOC_Os05g06430

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