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Mutant Information

Mutant Name	FN1689-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1689-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3317437	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06592
SBS	Chr3	7835897	A-T	HET
SBS	Chr3	7835899	A-T	HET
SBS	Chr3	24114005	C-T	HET
SBS	Chr4	23194148	C-T	HET
SBS	Chr4	33702928	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56510
SBS	Chr5	5612094	C-A	HET
SBS	Chr5	26427888	A-G	HET
SBS	Chr6	8901917	A-T	Homo
SBS	Chr6	10202955	G-C	Homo
SBS	Chr6	12614931	G-C	Homo
SBS	Chr6	18214126	G-A	Homo
SBS	Chr6	28034932	G-A	Homo
SBS	Chr7	7223584	T-C	Homo
SBS	Chr7	12780794	A-G	Homo
SBS	Chr7	22110246	C-T	HET
SBS	Chr7	26830567	C-T	Homo
SBS	Chr8	8807498	C-T	Homo
SBS	Chr9	14289902	A-G	HET
SBS	Chr10	700692	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02120
SBS	Chr10	1357310	G-A	HET
SBS	Chr11	5553139	T-G	HET	SPLICE_SITE_ACCEPTOR	LOC_Os11g10230
SBS	Chr11	17532948	G-T	HET
SBS	Chr11	24807137	G-A	Homo
SBS	Chr11	24998811	C-T	Homo
SBS	Chr12	14198530	G-T	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	5548782	5549201	419
Deletion	Chr12	10308614	10308615	1
Deletion	Chr7	17960280	17960284	4
Deletion	Chr3	21141039	21141040	1	LOC_Os03g38082
Deletion	Chr6	24082608	24082611	3
Deletion	Chr7	25016124	25016125	1
Deletion	Chr11	26659814	26659815	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	22163856	22163856	1	LOC_Os05g37840
Insertion	Chr2	32187870	32187870	1
Insertion	Chr2	33813349	33813349	1
Insertion	Chr4	8954481	8954481	1
Insertion	Chr4	9549950	9549950	1
Insertion	Chr5	12367664	12367666	3	LOC_Os05g21020
Insertion	Chr5	12714867	12714867	1
Insertion	Chr7	17960758	17960758	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3387430	3387800
Inversion	Chr8	6586437	6892251	2
Inversion	Chr12	21531809	22014244	LOC_Os12g35400
Inversion	Chr12	21531812	22014245	LOC_Os12g35400
Inversion	Chr11	25301684	25302006
Inversion	Chr2	26103427	26149761	2
Inversion	Chr2	26103430	26149761	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	8825038	Chr2	19352215
Translocation	Chr6	10540184	Chr2	11628125	2
Translocation	Chr12	13384314	Chr1	39114548
Translocation	Chr2	14983933	Chr1	20917473
Translocation	Chr12	19447633	Chr1	23373052
Translocation	Chr7	20724467	Chr3	29859488	2
Translocation	Chr2	26149760	Chr1	15385975	LOC_Os02g43340
Translocation	Chr2	35701504	Chr1	15385586	LOC_Os02g58370
Translocation	Chr2	35701512	Chr1	15385102	2

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