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Mutant Information

Mutant Name	FN1690-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1690-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23705725	A-G	HET
SBS	Chr11	14780607	T-C	HET
SBS	Chr11	23083481	A-T	HET
SBS	Chr12	13198287	T-A	HET
SBS	Chr12	2192875	G-T	HET
SBS	Chr12	9221276	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16150
SBS	Chr2	10782180	T-C	HET
SBS	Chr2	17754896	G-A	HET
SBS	Chr2	32278526	T-C	HET
SBS	Chr2	5510396	A-T	HET
SBS	Chr2	7237161	A-G	HET
SBS	Chr2	9213368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16210
SBS	Chr3	10280830	G-T	HET
SBS	Chr3	23914236	G-A	HET
SBS	Chr3	9360203	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16850
SBS	Chr4	19584222	A-C	HET
SBS	Chr4	24928817	T-C	HET
SBS	Chr4	4502866	T-C	HET
SBS	Chr5	23780553	G-A	HET
SBS	Chr5	29715159	T-G	HET
SBS	Chr6	13937349	T-G	HET
SBS	Chr6	9536934	C-T	HET
SBS	Chr7	13198919	G-A	HET
SBS	Chr7	15523331	C-T	Homo
SBS	Chr7	25880579	G-A	HET
SBS	Chr9	17333540	A-T	HET

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3907669	3907671	2
Deletion	Chr3	6024347	6024349	2
Deletion	Chr7	8794163	8794164	1
Deletion	Chr12	17733001	17773000	39999	LOC_Os12g29710
Deletion	Chr6	24078001	24105000	26999	4
Deletion	Chr3	28141320	28141321	1	LOC_Os03g49430

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	18716593	18716593	1
Insertion	Chr6	5048099	5048100	2

Inversions: 26

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	610669	610886	LOC_Os12g02050
Inversion	Chr12	2017049	2017359
Inversion	Chr1	2392978	3356117
Inversion	Chr5	3825592	3825723	LOC_Os05g07230
Inversion	Chr5	4911557	4911702
Inversion	Chr5	5347977	5348271
Inversion	Chr3	10556668	10556934	LOC_Os03g18840
Inversion	Chr8	10778094	10778217
Inversion	Chr7	13077616	13535868	2
Inversion	Chr7	13077628	13540219	2
Inversion	Chr12	13827822	13828124	LOC_Os12g24250
Inversion	Chr10	14428791	14429004	LOC_Os10g27340
Inversion	Chr1	16534585	16534692
Inversion	Chr1	17067499	17067945	LOC_Os01g31220
Inversion	Chr4	18172470	18172589	LOC_Os04g30430
Inversion	Chr9	18920938	18921266	LOC_Os09g31438
Inversion	Chr5	20259586	20259886	LOC_Os05g34220
Inversion	Chr5	20583683	20584064	2
Inversion	Chr7	21726548	21837021	2
Inversion	Chr7	21726593	21837029	2
Inversion	Chr11	22299377	22299939
Inversion	Chr3	22379197	22379352	LOC_Os03g40260
Inversion	Chr2	22605796	22606007
Inversion	Chr7	28923896	28924269
Inversion	Chr7	29098794	29099004	LOC_Os07g48602
Inversion	Chr4	33189140	33189575

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1518989	Chr6	25438347	2
Translocation	Chr4	6061531	Chr3	34971581	2
Translocation	Chr4	6062785	Chr3	34971586	2
Translocation	Chr12	8500490	Chr6	11334665
Translocation	Chr8	10124260	Chr6	15690600	LOC_Os08g16540
Translocation	Chr9	10353230	Chr5	14533759
Translocation	Chr9	10353250	Chr8	18506834
Translocation	Chr11	10672582	Chr8	10989191	2
Translocation	Chr9	15029389	Chr2	31025674	2
Translocation	Chr10	16453731	Chr6	24106238	2
Translocation	Chr11	18012810	Chr4	13099600	2
Translocation	Chr11	18321774	Chr10	6935147	LOC_Os11g31400
Translocation	Chr11	18322578	Chr4	20652378	2
Translocation	Chr8	20159704	Chr5	14039973	LOC_Os08g32540

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