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Mutant Information

Mutant Name	FN1692-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1692-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22213372	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	26113390	A-T	Homo
SBS	Chr1	26969670	T-C	Homo
SBS	Chr1	34119152	C-G	Homo
SBS	Chr1	37468334	T-C	HET
SBS	Chr1	40472533	C-A	Homo
SBS	Chr1	8675229	G-A	HET
SBS	Chr10	21435650	G-A	HET
SBS	Chr10	8968926	A-G	Homo
SBS	Chr11	10286058	G-A	Homo
SBS	Chr2	1784543	G-T	HET
SBS	Chr2	6718073	C-T	HET
SBS	Chr3	35717388	T-A	HET
SBS	Chr4	14860190	A-G	HET
SBS	Chr4	34838182	T-C	Homo
SBS	Chr4	5467693	G-T	Homo
SBS	Chr4	5467694	T-C	Homo
SBS	Chr5	16438164	A-G	Homo
SBS	Chr6	10796976	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g18970
SBS	Chr6	29505563	G-A	Homo
SBS	Chr7	14638762	G-A	HET
SBS	Chr7	18632102	A-C	HET
SBS	Chr7	21046659	G-A	HET
SBS	Chr9	4123649	A-G	HET
SBS	Chr9	7889393	T-G	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3903561	3903570	9	LOC_Os05g07340
Deletion	Chr2	4026906	4026911	5
Deletion	Chr1	4299116	4299119	3	LOC_Os01g08630
Deletion	Chr10	8114382	8114383	1
Deletion	Chr4	8529631	8529634	3
Deletion	Chr2	9139505	9139653	148
Deletion	Chr7	9381001	9551000	169999	21
Deletion	Chr7	9553001	9602000	48999	4
Deletion	Chr7	9605001	9655000	49999	7
Deletion	Chr1	9974285	9974286	1
Deletion	Chr5	14839502	14839504	2
Deletion	Chr7	18316285	18316286	1
Deletion	Chr9	19030601	19030602	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	9981486	9981486	1
Insertion	Chr5	5207897	5207898	2
Insertion	Chr9	19157243	19157243	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9771318	9838530
Inversion	Chr9	15879677	15879929

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3903018	Chr9	21454731
Translocation	Chr11	5263529	Chr6	8104665
Translocation	Chr9	8941257	Chr1	30237136
Translocation	Chr7	9654686	Chr5	22836574	2
Translocation	Chr7	9654867	Chr5	22827462
Translocation	Chr9	12312745	Chr2	17969247
Translocation	Chr12	13620512	Chr2	27672304
Translocation	Chr12	13620515	Chr2	27679742
Translocation	Chr5	22827489	Chr2	25883037
Translocation	Chr5	22836529	Chr2	35818959	LOC_Os05g38950
Translocation	Chr5	23786354	Chr1	25762331	LOC_Os05g40500
Translocation	Chr5	23795637	Chr1	25762338
Translocation	Chr8	28318532	Chr4	10350395

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