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Mutant Information

Mutant Name	FN1695-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1695-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38062970	A-C	HET
SBS	Chr1	38938733	T-C	HET
SBS	Chr10	18240056	C-T	HET
SBS	Chr12	11358181	G-A	Homo
SBS	Chr2	7900884	C-T	Homo
SBS	Chr3	25083001	A-T	HET
SBS	Chr3	25083002	C-T	HET
SBS	Chr3	26624724	A-T	HET
SBS	Chr3	6072578	T-G	Homo
SBS	Chr4	7119154	G-A	Homo
SBS	Chr5	19022410	C-T	HET
SBS	Chr6	11938735	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g20720
SBS	Chr6	21876903	T-A	Homo
SBS	Chr7	19800118	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g33160
SBS	Chr7	2771398	G-A	Homo
SBS	Chr8	17498743	G-A	Homo
SBS	Chr8	6857496	C-T	HET
SBS	Chr9	14149779	A-T	HET
SBS	Chr9	15725157	T-A	HET

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1271720	1271722	2
Deletion	Chr11	5329469	5329473	4
Deletion	Chr10	8107293	8107458	165
Deletion	Chr6	12846313	12846320	7
Deletion	Chr12	21464280	21464284	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12784947	12784947	1
Insertion	Chr10	12472073	12472073	1
Insertion	Chr12	11689811	11689812	2
Insertion	Chr4	15246189	15246189	1
Insertion	Chr4	19068792	19068792	1	LOC_Os04g31850
Insertion	Chr4	7947837	7947837	1
Insertion	Chr8	17910649	17910672	24

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24384730	24563737	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2624830	Chr3	3395189
Translocation	Chr12	5660595	Chr3	20221862	2
Translocation	Chr11	7078606	Chr7	17406960	2
Translocation	Chr9	8080999	Chr8	17262966
Translocation	Chr5	10269170	Chr1	16706045	LOC_Os05g17849
Translocation	Chr6	14068294	Chr2	10853837	2
Translocation	Chr7	16356608	Chr3	25791606	2
Translocation	Chr6	18208076	Chr4	19200806
Translocation	Chr11	28267891	Chr3	31985112	LOC_Os11g47039
Translocation	Chr3	31144334	Chr1	42241325	2
Translocation	Chr2	32189241	Chr1	21973307