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Mutant Information

Mutant Name	FN1696-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1696-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3254152	T-A	Homo
SBS	Chr1	7597705	T-C	HET
SBS	Chr1	9880508	T-G	HET
SBS	Chr1	10661256	G-A	Homo
SBS	Chr1	13070472	C-T	Homo
SBS	Chr1	23935720	T-G	HET
SBS	Chr1	39293393	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g67590
SBS	Chr2	8105163	T-A	Homo
SBS	Chr2	22645524	G-A	HET	STOP_GAINED	LOC_Os02g37520
SBS	Chr2	22645525	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g37520
SBS	Chr2	30815803	C-T	Homo
SBS	Chr2	30815804	C-T	Homo
SBS	Chr3	16899076	T-A	HET
SBS	Chr4	34960699	G-A	HET
SBS	Chr5	16313729	C-T	HET
SBS	Chr6	14750062	G-A	HET
SBS	Chr7	8946346	T-G	Homo
SBS	Chr7	11202462	C-T	HET
SBS	Chr7	23902626	A-G	HET
SBS	Chr10	769901	T-C	HET
SBS	Chr10	3183612	C-A	HET	STOP_GAINED	LOC_Os10g06200
SBS	Chr10	7537848	C-T	HET
SBS	Chr10	14413720	A-T	Homo
SBS	Chr11	8249352	G-T	HET
SBS	Chr12	14157867	A-G	Homo
SBS	Chr12	20323249	T-A	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1969964	1969966	2	LOC_Os02g04450
Deletion	Chr1	2769374	2769378	4
Deletion	Chr7	9239950	9239959	9
Deletion	Chr4	13943001	13975000	31999	4
Deletion	Chr5	14285671	14285672	1	LOC_Os05g24680
Deletion	Chr3	17308988	17308989	1
Deletion	Chr2	18483058	18483059	1
Deletion	Chr11	20045093	20045098	5
Deletion	Chr4	25578050	25578052	2	LOC_Os04g43220
Deletion	Chr1	41488314	41488315	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	7927151	7927183	33	LOC_Os03g14600
Insertion	Chr5	13223879	13223879	1
Insertion	Chr5	20644194	20644194	1
Insertion	Chr6	13729281	13729281	1
Insertion	Chr7	1507638	1507638	1
Insertion	Chr7	9704736	9704736	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8160058	8160370
Inversion	Chr4	30073118	30317889	2

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5428190	Chr1	955002	2
Translocation	Chr9	6936934	Chr1	2999102
Translocation	Chr10	6970256	Chr6	11416564	LOC_Os10g12530
Translocation	Chr11	6995380	Chr6	21780167
Translocation	Chr8	8178750	Chr3	28268378
Translocation	Chr8	8335301	Chr7	3171879	2
Translocation	Chr6	8967817	Chr5	12652267
Translocation	Chr9	12257969	Chr1	3222144
Translocation	Chr12	13936898	Chr4	16502356	LOC_Os12g24420
Translocation	Chr10	15476034	Chr3	18904911
Translocation	Chr8	16319882	Chr5	3089702
Translocation	Chr9	22821460	Chr8	10066089
Translocation	Chr12	25572484	Chr5	15911182
Translocation	Chr12	25709396	Chr7	12654388	2
Translocation	Chr12	25709750	Chr7	12654378	2
Translocation	Chr3	25888722	Chr1	13710821
Translocation	Chr11	27837796	Chr4	27276452	2
Translocation	Chr11	27838028	Chr1	33304489	2

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