Search Results
Mutant Information |
---|
Mutant Name | FN1698-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1698-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
|
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 18
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 38878551 | T-A | HET | ||
SBS | Chr2 | 9188733 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g16150 |
SBS | Chr2 | 24034448 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g39780 |
SBS | Chr3 | 26127923 | G-A | HET | ||
SBS | Chr3 | 31723710 | G-A | HET | ||
SBS | Chr4 | 10571851 | G-A | HET | ||
SBS | Chr4 | 33190145 | A-G | HET | ||
SBS | Chr5 | 23034158 | G-A | Homo | ||
SBS | Chr6 | 20900352 | A-C | Homo | ||
SBS | Chr8 | 17109559 | A-G | HET | ||
SBS | Chr8 | 19381757 | G-T | HET | ||
SBS | Chr9 | 850925 | G-A | HET | ||
SBS | Chr10 | 4769534 | G-A | Homo | ||
SBS | Chr10 | 7493438 | G-A | HET | ||
SBS | Chr10 | 12847527 | T-A | Homo | ||
SBS | Chr11 | 8609245 | A-T | HET | ||
SBS | Chr11 | 18949767 | C-A | Homo | ||
SBS | Chr11 | 19908862 | G-A | Homo |
Deletions: 7
Insertions: 7
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 26396949 | 26396950 | 2 | |
Insertion | Chr1 | 5144343 | 5144345 | 3 | |
Insertion | Chr4 | 2207625 | 2207625 | 1 | |
Insertion | Chr4 | 8178346 | 8178391 | 46 | LOC_Os04g14580 |
Insertion | Chr6 | 1060077 | 1060097 | 21 | LOC_Os06g02880 |
Insertion | Chr6 | 13374178 | 13374178 | 1 | |
Insertion | Chr8 | 95845 | 95856 | 12 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 17491279 | 17498261 | |
Inversion | Chr9 | 17491284 | 17498280 | |
Inversion | Chr11 | 21381529 | 21394866 | |
Inversion | Chr11 | 21381574 | 21394919 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 906379 | Chr2 | 18422084 | |
Translocation | Chr12 | 2147144 | Chr11 | 5073923 | |
Translocation | Chr11 | 5073845 | Chr3 | 22698033 | |
Translocation | Chr11 | 5074004 | Chr7 | 420971 | LOC_Os11g09460 |
Translocation | Chr12 | 6535954 | Chr11 | 17699315 | |
Translocation | Chr12 | 9135217 | Chr8 | 9992196 | LOC_Os12g16030 |
Translocation | Chr12 | 19773320 | Chr4 | 11189093 |