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Mutant Information

Mutant Name	FN1698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1698-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38878551	T-A	HET
SBS	Chr10	12847527	T-A	Homo
SBS	Chr10	4769534	G-A	Homo
SBS	Chr10	7493438	G-A	HET
SBS	Chr11	18949767	C-A	Homo
SBS	Chr11	19908862	G-A	Homo
SBS	Chr11	8609245	A-T	HET
SBS	Chr2	24034448	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39780
SBS	Chr2	9188733	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g16150
SBS	Chr3	26127923	G-A	HET
SBS	Chr3	31723710	G-A	HET
SBS	Chr4	10571851	G-A	HET
SBS	Chr4	33190145	A-G	HET
SBS	Chr5	23034158	G-A	Homo
SBS	Chr6	20900352	A-C	Homo
SBS	Chr8	17109559	A-G	HET
SBS	Chr8	19381757	G-T	HET
SBS	Chr9	850925	G-A	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	7836567	7836570	3
Deletion	Chr7	10862340	10862363	23
Deletion	Chr12	11509869	11509870	1
Deletion	Chr12	23447942	23447964	22
Deletion	Chr5	24017850	24017851	1
Deletion	Chr7	25970125	25970141	16
Deletion	Chr7	26050219	26050221	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	5144343	5144345	3
Insertion	Chr4	2207625	2207625	1
Insertion	Chr4	8178346	8178391	46	LOC_Os04g14580
Insertion	Chr6	1060077	1060097	21	LOC_Os06g02880
Insertion	Chr6	13374178	13374178	1
Insertion	Chr7	26396949	26396950	2
Insertion	Chr8	95845	95856	12

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17491279	17498261
Inversion	Chr9	17491284	17498280
Inversion	Chr11	21381529	21394866
Inversion	Chr11	21381574	21394919

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	906379	Chr2	18422084
Translocation	Chr12	2147144	Chr11	5073923
Translocation	Chr11	5073845	Chr3	22698033
Translocation	Chr11	5074004	Chr7	420971	LOC_Os11g09460
Translocation	Chr12	6535954	Chr11	17699315
Translocation	Chr12	9135217	Chr8	9992196	LOC_Os12g16030
Translocation	Chr12	19773320	Chr4	11189093