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Mutant Information

Mutant Name	FN1699-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1699-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39128664	C-T	HET
SBS	Chr10	20624597	T-C	HET
SBS	Chr2	22656911	G-A	HET
SBS	Chr4	18222631	A-C	Homo
SBS	Chr9	15185791	A-G	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	4350777	4350800	23
Deletion	Chr9	5020621	5020626	5
Deletion	Chr7	5776001	5811000	34999	7
Deletion	Chr7	5823001	5860000	36999	5
Deletion	Chr7	11816206	11816208	2
Deletion	Chr4	13979884	13979885	1	LOC_Os04g24370
Deletion	Chr2	17373714	17373715	1
Deletion	Chr9	18172889	18172890	1
Deletion	Chr7	18184281	18184282	1
Deletion	Chr9	20999035	20999038	3
Deletion	Chr11	22525532	22525534	2
Deletion	Chr8	27040577	27040579	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18323242	18323243	2	LOC_Os01g33260
Insertion	Chr10	336740	336741	2
Insertion	Chr12	20599922	20599923	2
Insertion	Chr6	12552615	12552615	1
Insertion	Chr8	27327049	27327050	2
Insertion	Chr9	6359097	6359098	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5225258	5614297	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	129244	Chr5	24007085	2
Translocation	Chr9	4757267	Chr4	1178866
Translocation	Chr6	7292234	Chr2	18076972	2
Translocation	Chr6	7521744	Chr3	25342952	2
Translocation	Chr11	8062083	Chr5	5528662
Translocation	Chr9	9357599	Chr6	29946116	2
Translocation	Chr12	22800140	Chr9	4757324	LOC_Os12g37180