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Mutant Information

Mutant Name	FN1700-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1700-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21243364	G-A	Homo
SBS	Chr1	3253628	A-T	HET
SBS	Chr1	42253912	C-T	Homo
SBS	Chr10	1098374	T-C	HET
SBS	Chr11	10437843	C-A	Homo
SBS	Chr12	24865141	G-A	HET
SBS	Chr12	8844058	G-A	Homo
SBS	Chr2	12221423	C-G	HET
SBS	Chr3	11444354	C-T	HET
SBS	Chr3	16268702	A-C	Homo
SBS	Chr3	33569556	T-C	Homo
SBS	Chr3	4971393	C-T	HET
SBS	Chr5	13454900	A-G	Homo
SBS	Chr5	19283975	A-G	HET
SBS	Chr5	21348813	C-A	HET
SBS	Chr5	26676871	T-G	HET
SBS	Chr5	29083723	A-G	HET
SBS	Chr6	13974272	T-C	HET
SBS	Chr6	15601023	G-A	HET
SBS	Chr6	15987257	G-A	HET
SBS	Chr8	9944986	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g16290

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3029982	3029984	2
Deletion	Chr9	7074001	7090000	15999	2
Deletion	Chr11	12180589	12181074	485
Deletion	Chr8	12281802	12281804	2
Deletion	Chr11	12681553	12681559	6
Deletion	Chr6	13237368	13237371	3
Deletion	Chr12	18018020	18018022	2
Deletion	Chr1	19673470	19673483	13	LOC_Os01g35560
Deletion	Chr10	21002404	21002405	1
Deletion	Chr3	26901036	26901042	6
Deletion	Chr3	36368107	36368110	3

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18020124	18020127	4
Insertion	Chr3	23674589	23674589	1
Insertion	Chr4	15715307	15715307	1
Insertion	Chr4	8492071	8492071	1	LOC_Os04g15610
Insertion	Chr5	1026491	1026491	1
Insertion	Chr5	28997540	28997541	2
Insertion	Chr6	21857776	21857777	2
Insertion	Chr6	8170446	8170454	9
Insertion	Chr7	24941088	24941088	1
Insertion	Chr9	895661	895662	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6110793	6247761	2
Inversion	Chr9	6110796	6821437
Inversion	Chr1	8940137	9011400	LOC_Os01g15880
Inversion	Chr1	8940139	9011413	LOC_Os01g15880
Inversion	Chr2	11847914	12557747	LOC_Os02g20110
Inversion	Chr2	11847919	12557758	LOC_Os02g20110
Inversion	Chr7	25470099	25480057	LOC_Os07g42570

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3354585	Chr3	8413618	2
Translocation	Chr9	6817742	Chr7	25470092	2
Translocation	Chr9	6821418	Chr7	25480056
Translocation	Chr9	7090226	Chr5	18939130
Translocation	Chr9	7090698	Chr5	18939125
Translocation	Chr9	7090716	Chr3	8607574	2
Translocation	Chr9	7092383	Chr3	8607672	2
Translocation	Chr11	12290456	Chr7	12241867
Translocation	Chr7	25340083	Chr3	31170139
Translocation	Chr12	26918410	Chr3	4267880	2

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