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Mutant Information

Mutant Name	FN1701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1701-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5135358	G-T	HET
SBS	Chr1	5463610	T-G	HET
SBS	Chr1	5471860	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g10390
SBS	Chr1	7774823	T-A	HET
SBS	Chr2	4760785	G-C	HET
SBS	Chr2	31095157	T-A	HET
SBS	Chr3	4086272	G-A	HET
SBS	Chr3	8601876	G-T	HET
SBS	Chr4	11119938	G-A	Homo
SBS	Chr4	26938486	G-A	Homo
SBS	Chr5	12806642	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g22550
SBS	Chr6	14437342	G-A	HET
SBS	Chr6	26834277	A-C	HET
SBS	Chr6	26854310	G-A	HET
SBS	Chr7	1437986	G-C	Homo
SBS	Chr7	11898290	G-A	HET
SBS	Chr7	27004255	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g45250
SBS	Chr8	19432988	C-T	Homo
SBS	Chr9	2328259	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04400
SBS	Chr11	6236790	G-A	HET
SBS	Chr11	8239495	C-T	HET
SBS	Chr11	9051547	A-G	HET
SBS	Chr11	24057930	T-A	HET
SBS	Chr12	14177672	G-A	HET
SBS	Chr12	14444676	C-A	Homo

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1220827	1220828	1	LOC_Os10g02960
Deletion	Chr10	4083499	4083510	11
Deletion	Chr12	5181138	5181139	1
Deletion	Chr10	8759656	8759659	3	LOC_Os10g17380
Deletion	Chr5	13044471	13044476	5
Deletion	Chr6	17647001	17674000	26999	2

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	17233628	17233629	2
Insertion	Chr2	26242437	26242438	2
Insertion	Chr5	4442750	4442750	1
Insertion	Chr7	26578145	26578147	3
Insertion	Chr8	5698031	5698091	61
Insertion	Chr11	9618851	9618851	1	LOC_Os11g17270
Insertion	Chr12	9856110	9856110	1
Insertion	Chr12	21760065	21760066	2
Insertion	Chr12	21982395	21982395	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	951906	979178	2
Inversion	Chr1	951920	979189	2
Inversion	Chr10	6874475	6874838	LOC_Os10g12354
Inversion	Chr12	21600247	21600398	LOC_Os12g35520

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9104328	Chr4	17791425	2
Translocation	Chr7	10124152	Chr4	10495481
Translocation	Chr3	12006790	Chr2	14398006	LOC_Os03g21080
Translocation	Chr3	12006791	Chr2	14397713	LOC_Os03g21080
Translocation	Chr3	12006793	Chr2	18772168	2
Translocation	Chr5	15490235	Chr4	3717389
Translocation	Chr11	16671542	Chr9	11544187	2
Translocation	Chr6	17650589	Chr1	17217763	2
Translocation	Chr12	20276025	Chr7	6892838
Translocation	Chr8	22489831	Chr6	14875277
Translocation	Chr11	24769288	Chr8	20145691
Translocation	Chr12	27069859	Chr8	26997773
Translocation	Chr11	28289979	Chr9	2321439	2

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