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Mutant Information

Mutant Name	FN1702-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1702-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10444620	G-C	HET
SBS	Chr1	13747885	T-G	HET
SBS	Chr1	1421935	T-A	Homo
SBS	Chr1	36548485	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g63080
SBS	Chr1	37032141	G-A	Homo
SBS	Chr10	1315227	C-G	HET
SBS	Chr10	4584825	C-A	Homo
SBS	Chr11	5695385	A-G	HET
SBS	Chr12	3956908	G-T	HET
SBS	Chr12	4150126	G-C	HET
SBS	Chr2	1083313	T-G	Homo
SBS	Chr2	6579241	T-C	Homo
SBS	Chr4	13423776	C-A	HET
SBS	Chr4	16635416	T-C	HET
SBS	Chr4	21117514	G-C	HET
SBS	Chr4	29166109	C-T	HET
SBS	Chr4	29994212	T-G	HET
SBS	Chr5	11899467	T-A	Homo
SBS	Chr6	13575565	G-A	HET
SBS	Chr6	27545017	C-T	HET
SBS	Chr6	28634829	C-T	HET
SBS	Chr7	28664299	C-T	HET
SBS	Chr9	4107808	C-G	HET
SBS	Chr9	9271864	C-T	HET
SBS	Chr9	9640482	A-G	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3011994	3012282	288
Deletion	Chr11	3444008	3444010	2
Deletion	Chr11	4780578	4780581	3	LOC_Os11g09000
Deletion	Chr10	5365749	5365751	2	LOC_Os10g09910
Deletion	Chr10	5877890	5877899	9	LOC_Os10g10640
Deletion	Chr8	11189123	11189124	1	LOC_Os08g18740
Deletion	Chr12	12560001	12593000	32999	2
Deletion	Chr4	19532434	19532435	1
Deletion	Chr5	22089731	22089732	1
Deletion	Chr3	23038759	23038761	2
Deletion	Chr11	24997192	24997199	7
Deletion	Chr1	26730938	26730953	15
Deletion	Chr7	29117784	29117787	3	LOC_Os07g48630
Deletion	Chr3	29441148	29441149	1
Deletion	Chr2	30952882	30952886	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15752577	15752577	1
Insertion	Chr12	24546132	24546132	1
Insertion	Chr12	5609530	5609531	2
Insertion	Chr2	9244220	9244227	8
Insertion	Chr5	15342362	15342362	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4139756	4143275
Inversion	Chr12	4139850	4143364
Inversion	Chr4	32760787	32776077	LOC_Os04g55090
Inversion	Chr4	32760810	32776088	LOC_Os04g55090

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1849495	Chr1	25578078
Translocation	Chr7	2904445	Chr4	15938747	LOC_Os07g06000
Translocation	Chr12	4136909	Chr7	3304292

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