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Mutant Information

Mutant Name	FN1707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1707-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 57

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24292437	C-T	Homo
SBS	Chr1	3237224	A-G	HET
SBS	Chr1	38209651	C-T	HET
SBS	Chr1	7661998	G-A	Homo
SBS	Chr10	12525436	C-T	HET
SBS	Chr10	13865606	C-T	HET
SBS	Chr10	17518125	A-G	HET
SBS	Chr10	18838180	G-A	HET
SBS	Chr11	1180964	A-C	HET
SBS	Chr11	14036685	A-C	HET
SBS	Chr11	14100823	T-C	Homo
SBS	Chr11	20783228	T-A	Homo
SBS	Chr11	25441397	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42240
SBS	Chr11	9600557	G-T	HET
SBS	Chr12	11500530	A-G	Homo
SBS	Chr12	16992700	G-A	HET
SBS	Chr12	17384071	A-C	HET
SBS	Chr12	19792060	G-A	HET
SBS	Chr12	19792104	T-A	HET
SBS	Chr12	26067283	C-A	HET
SBS	Chr2	11990543	G-A	HET
SBS	Chr2	16022315	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27230
SBS	Chr2	32320025	G-C	Homo
SBS	Chr2	34901839	T-C	Homo
SBS	Chr3	13281132	G-T	HET
SBS	Chr3	29220457	A-G	HET
SBS	Chr3	30759476	T-G	HET
SBS	Chr3	36180413	G-A	HET
SBS	Chr3	7129959	C-T	Homo
SBS	Chr4	10541021	T-C	HET
SBS	Chr4	13888214	G-A	HET
SBS	Chr4	15057041	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g25890
SBS	Chr4	20930398	G-A	Homo
SBS	Chr4	27441010	G-T	Homo
SBS	Chr4	31335478	G-A	Homo
SBS	Chr4	31335479	A-T	Homo
SBS	Chr5	13873790	A-C	HET
SBS	Chr5	1965199	A-G	Homo
SBS	Chr5	20860796	C-T	Homo
SBS	Chr5	23474715	C-T	HET
SBS	Chr5	25725566	T-C	Homo
SBS	Chr5	3733716	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07090
SBS	Chr6	11510531	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20070
SBS	Chr6	21858413	T-A	HET
SBS	Chr6	23731232	G-T	HET
SBS	Chr6	25369291	C-A	HET
SBS	Chr7	11936205	C-T	Homo
SBS	Chr7	22489357	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37560
SBS	Chr7	22489359	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37560
SBS	Chr7	23482033	T-A	HET
SBS	Chr7	6568810	C-T	Homo
SBS	Chr7	7402342	C-T	Homo
SBS	Chr8	20488083	A-G	HET
SBS	Chr8	20521717	G-A	HET
SBS	Chr8	26776968	A-G	HET
SBS	Chr8	27837595	C-T	HET
SBS	Chr9	9838272	T-A	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1489766	1489768	2
Deletion	Chr7	17632100	17632179	79
Deletion	Chr2	17801431	17801432	1
Deletion	Chr10	18838163	18838167	4	LOC_Os10g35250
Deletion	Chr12	19514034	19514035	1
Deletion	Chr3	20665289	20665290	1
Deletion	Chr3	27319486	27319489	3
Deletion	Chr4	31777307	31777308	1
Deletion	Chr1	32403175	32403179	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	26893886	26893889	4
Insertion	Chr5	17268170	17268171	2
Insertion	Chr5	21816867	21816867	1
Insertion	Chr6	23090979	23090979	1	LOC_Os06g38920

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5890382	6649265
Inversion	Chr1	6649278	6974633	2
Inversion	Chr3	7471634	7501234	2
Inversion	Chr3	7471639	7501233	2
Inversion	Chr6	24596119	24596362
Inversion	Chr1	29891292	29891422

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	729187	Chr3	31273133
Translocation	Chr10	4089602	Chr6	14634633
Translocation	Chr5	6200335	Chr4	16995391	LOC_Os05g11064
Translocation	Chr7	9026353	Chr2	7996989
Translocation	Chr11	17712239	Chr6	30977071	2
Translocation	Chr8	25425642	Chr2	16056974

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