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Mutant Information

Mutant Name	FN1708-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1708-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7698780	A-G	HET
SBS	Chr10	12480324	G-A	Homo
SBS	Chr10	18046167	G-A	Homo
SBS	Chr11	13265586	G-T	HET
SBS	Chr11	25612310	C-T	HET
SBS	Chr12	21762713	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35740
SBS	Chr12	23305993	C-T	HET
SBS	Chr12	23305998	T-C	HET
SBS	Chr2	29558680	A-G	Homo
SBS	Chr2	9144896	G-T	HET
SBS	Chr3	33962905	C-T	HET
SBS	Chr4	26810722	C-A	Homo
SBS	Chr4	27776567	A-T	Homo
SBS	Chr4	35089772	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g58990
SBS	Chr5	12763083	G-A	HET	STOP_GAINED	LOC_Os05g22480
SBS	Chr5	13966291	G-A	HET
SBS	Chr5	6031046	G-C	HET
SBS	Chr6	17721311	G-C	HET
SBS	Chr6	20446734	C-A	HET
SBS	Chr6	25534039	T-G	HET
SBS	Chr7	7444214	C-T	Homo
SBS	Chr9	10178731	C-T	HET
SBS	Chr9	21959251	C-G	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	64116	64470	354
Deletion	Chr10	1839448	1839453	5	LOC_Os10g04020
Deletion	Chr4	9014565	9014574	9
Deletion	Chr1	10178376	10178503	127
Deletion	Chr4	11004137	11004138	1
Deletion	Chr9	13750392	13750393	1
Deletion	Chr8	18147092	18147093	1
Deletion	Chr3	18215232	18215239	7	LOC_Os03g31839
Deletion	Chr3	18476015	18476023	8
Deletion	Chr3	19793202	19793203	1
Deletion	Chr2	21912720	21912721	1
Deletion	Chr3	22555072	22555076	4	LOC_Os03g40560
Deletion	Chr11	27122724	27122731	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	1051332	1051332	1
Insertion	Chr11	12116424	12116465	42
Insertion	Chr11	22527025	22527027	3
Insertion	Chr2	1505963	1505963	1
Insertion	Chr4	16328224	16328224	1	LOC_Os04g27610

Inversions: 41

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2120046	2120161
Inversion	Chr7	2313561	2313694	LOC_Os07g05190
Inversion	Chr10	3671061	3671348
Inversion	Chr7	3872036	3872202	2
Inversion	Chr6	3977391	3977654
Inversion	Chr12	4373470	4373593	2
Inversion	Chr12	5259433	5259747	LOC_Os12g09930
Inversion	Chr5	5719501	5719629	LOC_Os05g10520
Inversion	Chr2	6070993	6071528	LOC_Os02g11760
Inversion	Chr9	6456635	6456835	2
Inversion	Chr7	10127940	10128060
Inversion	Chr11	10818983	10819130
Inversion	Chr8	14212971	14213117	LOC_Os08g23470
Inversion	Chr9	14629105	14629430
Inversion	Chr4	14734654	14735008
Inversion	Chr11	16136813	16136935	LOC_Os11g28070
Inversion	Chr11	18489582	18489980	LOC_Os11g31620
Inversion	Chr3	20662744	20838936	2
Inversion	Chr3	20662754	20838949	2
Inversion	Chr5	20749799	20750068	LOC_Os05g34920
Inversion	Chr3	21358551	21358800	LOC_Os03g38480
Inversion	Chr9	22288866	22289061	LOC_Os09g38790
Inversion	Chr8	22375223	22375394
Inversion	Chr10	22852664	22852888
Inversion	Chr3	23153596	23153816	LOC_Os03g41650
Inversion	Chr8	23294104	23294278	LOC_Os08g36860
Inversion	Chr2	23464499	23464757	LOC_Os02g38810
Inversion	Chr7	25807905	25808358
Inversion	Chr2	25871475	25871594
Inversion	Chr12	26196173	26196399
Inversion	Chr4	27769290	27769703
Inversion	Chr4	28704340	28704521	LOC_Os04g48200
Inversion	Chr3	29069216	29082329	LOC_Os03g50880
Inversion	Chr3	29069218	29082343	LOC_Os03g50880
Inversion	Chr4	30644974	30645164	LOC_Os04g51710
Inversion	Chr3	33739916	33740214
Inversion	Chr1	33816225	33816606	LOC_Os01g58510
Inversion	Chr1	34099082	34099405
Inversion	Chr1	34166733	34166934
Inversion	Chr1	37424816	37425177
Inversion	Chr1	42054649	42055019

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6098939	Chr4	33550591
Translocation	Chr12	7608871	Chr2	13477787	2
Translocation	Chr12	11233290	Chr1	11494819
Translocation	Chr12	13773249	Chr4	714774	LOC_Os12g24170
Translocation	Chr7	16324864	Chr3	22066452	LOC_Os07g27980
Translocation	Chr12	23130077	Chr3	14084284
Translocation	Chr12	24065903	Chr7	25224202
Translocation	Chr3	26025308	Chr1	20308584	2
Translocation	Chr12	27051819	Chr7	5814191

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