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Mutant Information

Mutant Name	FN1711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1711-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13863189	G-A	HET
SBS	Chr1	1921970	G-A	HET
SBS	Chr1	20277536	C-T	Homo
SBS	Chr1	38935564	C-T	Homo
SBS	Chr1	9693635	C-T	Homo
SBS	Chr10	14262416	A-T	Homo
SBS	Chr10	14262417	T-G	Homo
SBS	Chr10	20369834	T-G	Homo
SBS	Chr10	3227548	G-T	HET
SBS	Chr11	13611962	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24012
SBS	Chr12	15968799	G-A	Homo
SBS	Chr12	3594599	T-C	Homo
SBS	Chr2	9164128	G-A	Homo
SBS	Chr3	15444097	A-C	HET
SBS	Chr3	18850269	G-A	Homo
SBS	Chr3	20036888	C-T	Homo
SBS	Chr3	28020159	T-C	Homo
SBS	Chr4	20307467	T-A	HET
SBS	Chr4	21187441	C-T	HET
SBS	Chr4	26937139	G-A	HET
SBS	Chr4	28257061	T-A	HET
SBS	Chr4	33224183	A-G	HET
SBS	Chr5	21351688	C-T	HET
SBS	Chr5	27244615	G-A	HET
SBS	Chr5	3814180	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07220
SBS	Chr7	11096126	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g18760
SBS	Chr7	28801994	C-T	HET
SBS	Chr8	12488246	C-A	HET	STOP_GAINED	LOC_Os08g20790
SBS	Chr8	22895222	T-C	HET
SBS	Chr8	790221	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02240
SBS	Chr9	3142643	A-T	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1982332	1982333	1
Deletion	Chr4	2505386	2505397	11
Deletion	Chr4	10244405	10244414	9
Deletion	Chr8	11742064	11742065	1
Deletion	Chr5	13554097	13554098	1
Deletion	Chr3	13953795	13953797	2
Deletion	Chr10	15704044	15704051	7	LOC_Os10g30240
Deletion	Chr8	22691968	22691975	7
Deletion	Chr1	30676623	30676625	2	LOC_Os01g53390
Deletion	Chr1	38452636	38452642	6

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12926821	12926821	1
Insertion	Chr11	18678519	18678520	2
Insertion	Chr11	22821060	22821060	1
Insertion	Chr4	31827411	31827418	8
Insertion	Chr5	10289090	10289090	1
Insertion	Chr5	6397335	6397337	3
Insertion	Chr6	15988354	15988355	2
Insertion	Chr8	23298558	23298588	31
Insertion	Chr8	25261230	25261230	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2379971	2380236	LOC_Os05g04940
Inversion	Chr9	11003498	11003774	LOC_Os09g17990
Inversion	Chr10	16110404	16110821	LOC_Os10g30890
Inversion	Chr6	25112989	25113388
Inversion	Chr1	31377943	31378049
Inversion	Chr2	35389698	35389846	LOC_Os02g57790

No Translocation

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