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Mutant Information

Mutant Name	FN1712-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1712-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	22686574	G-A	HET
SBS	Chr11	10030050	T-C	HET
SBS	Chr11	10335076	G-A	HET
SBS	Chr11	10449326	G-T	Homo
SBS	Chr11	17947347	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g30820
SBS	Chr11	17947349	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g30820
SBS	Chr12	26806715	A-G	HET
SBS	Chr2	1498633	T-C	HET
SBS	Chr2	27711966	C-T	HET
SBS	Chr3	35515810	T-C	HET
SBS	Chr4	20366406	A-T	HET
SBS	Chr4	22642831	C-T	Homo
SBS	Chr4	32747762	G-A	Homo
SBS	Chr4	7420905	C-T	Homo
SBS	Chr7	14166307	T-C	HET
SBS	Chr7	20345274	A-T	HET
SBS	Chr7	8022812	A-G	HET
SBS	Chr7	9069206	A-T	HET
SBS	Chr8	12298412	T-A	HET
SBS	Chr8	14581206	C-T	HET
SBS	Chr8	6968369	C-T	HET
SBS	Chr9	8585599	C-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2583001	2612000	28999	6
Deletion	Chr6	4046643	4046644	1
Deletion	Chr12	7131001	7169000	37999	5
Deletion	Chr8	8316509	8316511	2
Deletion	Chr10	12158976	12158978	2
Deletion	Chr2	13504045	13504047	2
Deletion	Chr11	16310558	16310566	8
Deletion	Chr11	17493806	17493808	2
Deletion	Chr3	18442822	18442829	7
Deletion	Chr7	20021678	20021682	4	LOC_Os07g33490
Deletion	Chr10	20673008	20673011	3
Deletion	Chr3	29508251	29508253	2
Deletion	Chr1	39074960	39074966	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	10369028	10369029	2
Insertion	Chr3	22607473	22607481	9
Insertion	Chr6	3255931	3255932	2
Insertion	Chr8	6937929	6937929	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6665082	6665262	LOC_Os03g12570
Inversion	Chr4	9780774	9838538
Inversion	Chr4	11085408	11085859
Inversion	Chr7	15048535	15048885	2
Inversion	Chr4	18653881	18654043
Inversion	Chr7	19519668	20348414	LOC_Os07g32690
Inversion	Chr7	19519675	20348415	LOC_Os07g32690
Inversion	Chr1	28621311	28621623
Inversion	Chr5	29078883	29079158
Inversion	Chr4	31462943	31463089

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	17931637	Chr1	2892449
Translocation	Chr8	18810894	Chr1	33398362	LOC_Os08g30550
Translocation	Chr8	18811008	Chr1	33226560	LOC_Os08g30550
Translocation	Chr8	18811055	Chr1	33400979	LOC_Os08g30550
Translocation	Chr7	19538790	Chr1	36222167
Translocation	Chr7	19538796	Chr1	36221112
Translocation	Chr7	20017646	Chr1	33400939
Translocation	Chr7	20017692	Chr1	33400535
Translocation	Chr7	27171021	Chr2	11320734

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