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Mutant Information

Mutant Name	FN1713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1713-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21442377	G-A	Homo
SBS	Chr2	14034171	G-A	HET
SBS	Chr3	3518366	T-A	HET
SBS	Chr4	7411300	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13330
SBS	Chr4	10822030	G-T	HET
SBS	Chr5	3701079	C-T	Homo
SBS	Chr5	18778379	C-T	Homo
SBS	Chr5	29401164	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g51260
SBS	Chr7	9373592	A-C	Homo
SBS	Chr8	6159750	G-A	HET
SBS	Chr8	13392751	A-G	HET
SBS	Chr8	18833586	G-A	HET
SBS	Chr8	25006860	T-C	Homo
SBS	Chr9	12211579	G-C	HET
SBS	Chr9	16915288	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27800
SBS	Chr10	22602572	C-T	HET
SBS	Chr12	22896969	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37300

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3821860	3821862	2
Deletion	Chr3	9643356	9643362	6
Deletion	Chr12	13896108	13896114	6
Deletion	Chr11	15262552	15262560	8
Deletion	Chr8	19090474	19090482	8
Deletion	Chr9	20058548	20058549	1
Deletion	Chr7	22111529	22111539	10	LOC_Os07g36930
Deletion	Chr12	24820635	24820636	1
Deletion	Chr6	25175565	25175569	4
Deletion	Chr5	29074081	29074082	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	3379819	3379821	3	LOC_Os04g06430
Insertion	Chr4	22689646	22689646	1
Insertion	Chr7	1128322	1128329	8
Insertion	Chr7	19203584	19203584	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1428875	1428981
Inversion	Chr11	19278954	19279097	LOC_Os11g32650

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	338423	Chr5	11351563	2
Translocation	Chr10	4400267	Chr8	5022446
Translocation	Chr7	4450793	Chr6	30983134
Translocation	Chr4	7545605	Chr1	32129092	LOC_Os04g13530
Translocation	Chr5	13711917	Chr1	11618617	2
Translocation	Chr8	14785710	Chr1	20577303
Translocation	Chr11	19620768	Chr6	31112327
Translocation	Chr6	31247529	Chr2	7
Translocation	Chr4	32282745	Chr3	21730705	2