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Mutant Information

Mutant Name	FN1715-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1715-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	233467	C-T	HET
SBS	Chr11	23816458	G-A	Homo
SBS	Chr11	7969526	G-A	Homo
SBS	Chr2	10702143	A-T	Homo
SBS	Chr2	16619728	A-T	HET
SBS	Chr2	26048389	C-A	Homo
SBS	Chr3	10591478	G-T	HET
SBS	Chr4	2548767	C-T	HET
SBS	Chr4	32930490	G-A	Homo
SBS	Chr5	22507263	A-C	HET
SBS	Chr5	5936897	A-T	HET
SBS	Chr6	14761706	A-T	Homo
SBS	Chr6	21295954	T-C	Homo
SBS	Chr6	2795088	T-G	Homo
SBS	Chr8	20155932	T-A	Homo
SBS	Chr9	11371373	C-T	Homo
SBS	Chr9	21768669	G-T	Homo
SBS	Chr9	5790927	G-A	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	8096741	8096742	1
Deletion	Chr2	8650932	8650941	9
Deletion	Chr2	10869135	10869146	11
Deletion	Chr9	10992193	10992197	4	LOC_Os09g17970
Deletion	Chr7	12409197	12409198	1
Deletion	Chr5	18050446	18050453	7
Deletion	Chr8	18622013	18622014	1
Deletion	Chr8	19832166	19832177	11	LOC_Os08g31980
Deletion	Chr3	20241428	20241429	1
Deletion	Chr7	22977762	22977764	2
Deletion	Chr6	23326645	23326647	2	LOC_Os06g39310
Deletion	Chr5	24025126	24025128	2	LOC_Os05g40980
Deletion	Chr4	33883845	33883855	10
Deletion	Chr4	34902234	34902235	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40423363	40423388	26
Insertion	Chr11	12092148	12092156	9
Insertion	Chr12	2026564	2026564	1
Insertion	Chr12	9856673	9856673	1
Insertion	Chr8	24064276	24064277	2
Insertion	Chr8	27528500	27528501	2	LOC_Os08g43520

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13458080	13459179	LOC_Os03g23250
Inversion	Chr5	20712076	20712266	LOC_Os05g34870
Inversion	Chr3	23445091	23445449	LOC_Os03g42120
Inversion	Chr5	26901381	27222831	2
Inversion	Chr5	26901401	27222841	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	12146453	Chr1	1044051	LOC_Os03g21260
Translocation	Chr12	18630219	Chr7	6891476