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Mutant Information

Mutant Name	FN1716-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1716-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15733317	T-A	Homo
SBS	Chr1	36424168	G-A	Homo
SBS	Chr2	20361754	G-A	HET
SBS	Chr3	18699629	G-C	Homo
SBS	Chr3	19373317	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33950
SBS	Chr4	448327	T-C	Homo
SBS	Chr4	4897738	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g08836
SBS	Chr4	6481301	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g11820
SBS	Chr4	7289247	G-T	Homo
SBS	Chr4	13969216	A-T	Homo
SBS	Chr6	8013584	C-A	Homo
SBS	Chr6	17856260	T-C	HET
SBS	Chr6	17856261	C-T	HET
SBS	Chr6	21707894	T-C	HET
SBS	Chr7	2354578	G-A	Homo
SBS	Chr7	23086665	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38410
SBS	Chr8	3222971	A-G	HET
SBS	Chr8	21990713	T-G	HET
SBS	Chr9	2498389	A-T	Homo
SBS	Chr9	5031651	T-C	Homo
SBS	Chr10	3223204	C-T	HET
SBS	Chr10	5979367	G-A	HET
SBS	Chr10	19757207	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g36880
SBS	Chr11	11689475	T-C	HET
SBS	Chr11	16839146	T-G	HET
SBS	Chr11	24288890	G-C	HET
SBS	Chr11	27161207	C-T	Homo
SBS	Chr12	14650916	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g25390
SBS	Chr12	23663360	G-T	Homo

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	982971	982976	5
Deletion	Chr1	2238550	2238552	2
Deletion	Chr4	5090553	5090554	1
Deletion	Chr8	5406001	5452000	45999	7
Deletion	Chr10	6086001	6114000	27999	5
Deletion	Chr4	6345530	6345551	21
Deletion	Chr3	9449737	9449738	1
Deletion	Chr7	11086478	11086500	22
Deletion	Chr9	11152934	11152936	2
Deletion	Chr2	12692379	12692383	4
Deletion	Chr7	21199361	21199362	1
Deletion	Chr9	21315505	21315510	5
Deletion	Chr1	21369726	21369743	17
Deletion	Chr12	23651001	23663000	11999	2
Deletion	Chr11	23933556	23933557	1
Deletion	Chr5	24460047	24460048	1
Deletion	Chr5	26689205	26689229	24
Deletion	Chr2	27033842	27033844	2	LOC_Os02g44610
Deletion	Chr1	31285685	31285687	2
Deletion	Chr1	32633550	32633555	5
Deletion	Chr2	35247233	35247236	3
Deletion	Chr1	42889149	42889163	14

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8910592	8910593	2
Insertion	Chr8	8567968	8567971	4
Insertion	Chr12	20273415	20273416	2
Insertion	Chr4	30525544	30525545	2
Insertion	Chr5	9120922	9120922	1	LOC_Os05g16130
Insertion	Chr8	25044361	25044361	1	LOC_Os08g39580
Insertion	Chr9	14443824	14443824	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1319892	1320099
Inversion	Chr5	2608947	2609083
Inversion	Chr1	8756239	8756594
Inversion	Chr6	10914252	10914637	LOC_Os06g19170
Inversion	Chr7	12417944	12418100
Inversion	Chr3	34182535	34182845

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	9425514	Chr4	4120446	2
Translocation	Chr9	10748399	Chr3	13192574
Translocation	Chr9	15112975	Chr1	5474338
Translocation	Chr12	23272077	Chr8	5453851	LOC_Os12g37860

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