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Mutant Information

Mutant Name	FN1717-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1717-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4825496	A-G	Homo
SBS	Chr1	15731172	T-G	HET
SBS	Chr2	7859833	G-C	HET
SBS	Chr2	26037899	C-T	HET
SBS	Chr2	26805133	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g44310
SBS	Chr2	27044753	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g44630
SBS	Chr2	27044754	C-A	HET
SBS	Chr2	33766950	T-C	HET
SBS	Chr2	34680453	T-A	HET
SBS	Chr3	16855870	C-G	Homo
SBS	Chr3	21969250	C-T	HET
SBS	Chr3	25747445	A-G	Homo
SBS	Chr4	7244385	G-T	HET
SBS	Chr5	7981388	C-T	HET
SBS	Chr5	13367890	C-T	HET
SBS	Chr5	26321117	G-A	HET
SBS	Chr6	14829148	G-A	Homo
SBS	Chr7	10053712	C-A	HET
SBS	Chr7	10338729	G-A	HET
SBS	Chr7	11130433	G-A	HET
SBS	Chr7	11481599	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19400
SBS	Chr7	14092835	T-C	HET
SBS	Chr9	710818	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g02020
SBS	Chr9	17275343	C-T	HET
SBS	Chr10	1820324	A-T	HET
SBS	Chr10	2484291	G-A	Homo
SBS	Chr10	4973558	C-G	HET
SBS	Chr11	17833607	G-T	HET
SBS	Chr11	20490071	C-T	HET
SBS	Chr11	23814739	G-C	HET
SBS	Chr11	28695350	A-C	HET
SBS	Chr12	6535082	G-A	HET
SBS	Chr12	14181931	C-T	Homo
SBS	Chr12	16333744	G-A	Homo

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2737049	2737050	1	LOC_Os09g05080
Deletion	Chr4	4258155	4258156	1
Deletion	Chr10	6016403	6016404	1
Deletion	Chr9	7076010	7076011	1
Deletion	Chr6	7587001	7808000	220999	35
Deletion	Chr11	10973212	10973213	1
Deletion	Chr8	12828520	12828533	13
Deletion	Chr11	12998861	12998862	1	LOC_Os11g22600
Deletion	Chr8	13657970	13657977	7
Deletion	Chr6	15015050	15015051	1
Deletion	Chr4	19724764	19724765	1	LOC_Os04g32720
Deletion	Chr4	22065846	22065849	3
Deletion	Chr1	23280854	23280858	4	LOC_Os01g41110
Deletion	Chr5	23690962	23690967	5	LOC_Os05g40310
Deletion	Chr5	23828378	23828383	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	10879317	10879318	2
Insertion	Chr10	21836199	21836202	4
Insertion	Chr12	16685334	16685334	1

Inversions: 17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1041550	1041793
Inversion	Chr12	2201017	2201192
Inversion	Chr7	2687140	2687425	LOC_Os07g05640
Inversion	Chr3	5482960	5483480	2
Inversion	Chr4	5920084	5920276
Inversion	Chr6	8375665	8375815	LOC_Os06g14780
Inversion	Chr5	12874615	12874828
Inversion	Chr10	16236801	16236912	LOC_Os10g31040
Inversion	Chr12	16536450	16536648
Inversion	Chr11	17373447	17373771
Inversion	Chr9	17851963	17852222	LOC_Os09g29404
Inversion	Chr4	18560948	18561170	LOC_Os04g31070
Inversion	Chr7	24379683	24379849
Inversion	Chr6	25198610	25198772	LOC_Os06g41980
Inversion	Chr11	25223806	25224025
Inversion	Chr4	25541888	25542294
Inversion	Chr4	30483124	30483271	LOC_Os04g51460

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6181809	Chr4	16026052
Translocation	Chr7	7184911	Chr5	23128976	LOC_Os07g12590
Translocation	Chr7	7210484	Chr5	23128951
Translocation	Chr7	15549627	Chr6	10850037	2
Translocation	Chr8	16363219	Chr4	18299506
Translocation	Chr9	20200261	Chr6	14069750	LOC_Os09g34214

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