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Mutant Information

Mutant Name	FN1718-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1718-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10236102	G-A	HET
SBS	Chr1	10890932	T-G	HET
SBS	Chr1	24523319	G-A	HET
SBS	Chr1	25247238	A-T	Homo
SBS	Chr1	3393632	G-A	HET
SBS	Chr1	42719341	A-G	HET
SBS	Chr10	9472665	G-A	HET
SBS	Chr11	20800372	G-T	HET
SBS	Chr12	13221718	T-C	HET
SBS	Chr12	13460213	G-A	HET
SBS	Chr12	21740254	G-A	HET
SBS	Chr2	19133040	C-T	Homo
SBS	Chr2	3260165	A-G	HET
SBS	Chr2	9190752	T-C	HET
SBS	Chr2	9385486	G-A	HET
SBS	Chr3	20667375	A-T	Homo
SBS	Chr3	487107	C-T	HET
SBS	Chr4	17280235	C-T	Homo
SBS	Chr4	18927731	G-A	HET
SBS	Chr4	19226916	A-G	Homo
SBS	Chr4	19226925	A-G	Homo
SBS	Chr5	20023406	G-A	HET
SBS	Chr5	22232089	A-C	Homo
SBS	Chr5	6508795	C-T	Homo
SBS	Chr6	114449	T-C	HET
SBS	Chr6	14890602	A-T	HET
SBS	Chr6	23321201	C-G	HET
SBS	Chr6	28991696	G-A	Homo
SBS	Chr6	30436203	G-A	Homo
SBS	Chr6	3189980	G-A	HET
SBS	Chr7	11553443	C-G	HET
SBS	Chr7	13219120	G-T	HET
SBS	Chr7	13497752	C-T	HET
SBS	Chr7	14603079	C-T	HET
SBS	Chr7	20783800	G-A	Homo
SBS	Chr7	28537160	G-A	Homo
SBS	Chr8	13777220	G-A	Homo
SBS	Chr8	21438256	T-A	Homo
SBS	Chr8	21552484	T-A	Homo
SBS	Chr8	317276	A-T	Homo
SBS	Chr8	5844797	T-C	Homo
SBS	Chr9	22684396	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g39462

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	77180	77182	2
Deletion	Chr10	1583258	1583260	2
Deletion	Chr5	3659415	3659417	2
Deletion	Chr11	7275225	7275226	1
Deletion	Chr5	8357888	8357891	3
Deletion	Chr7	10449516	10449519	3	LOC_Os07g17700
Deletion	Chr5	12482362	12482363	1
Deletion	Chr5	13287153	13287156	3
Deletion	Chr3	13359225	13359226	1
Deletion	Chr3	14288940	14288942	2
Deletion	Chr6	16326305	16326307	2	LOC_Os06g28660
Deletion	Chr6	17640901	17640913	12	LOC_Os06g30510
Deletion	Chr3	18777922	18777925	3
Deletion	Chr5	20191191	20191201	10
Deletion	Chr9	20235766	20235767	1
Deletion	Chr9	20600852	20600855	3	LOC_Os09g35800
Deletion	Chr6	25279001	25390000	110999	22

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11271277	11271278	2
Insertion	Chr10	16190205	16190205	1
Insertion	Chr12	19997751	19997754	4
Insertion	Chr12	21964312	21964312	1
Insertion	Chr6	28303447	28303447	1
Insertion	Chr7	14200690	14200691	2	LOC_Os07g24960
Insertion	Chr8	16126126	16126126	1
Insertion	Chr9	4781773	4781774	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1324797	1324917	LOC_Os11g03450
Inversion	Chr3	5392132	5392352	LOC_Os03g10580
Inversion	Chr11	6104449	6104662	LOC_Os11g11050
Inversion	Chr11	22032418	22032620
Inversion	Chr6	25284243	25423003	2
Inversion	Chr1	25530122	25530383	LOC_Os01g44990

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6430717	Chr2	18079684	LOC_Os05g11380
Translocation	Chr8	24008204	Chr5	10723108	2

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