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Mutant Information

Mutant Name	FN1719-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1719-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19420206	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35070
SBS	Chr1	2665738	C-A	Homo
SBS	Chr1	27468427	C-G	Homo
SBS	Chr1	36234889	A-T	Homo
SBS	Chr1	5432574	T-A	HET
SBS	Chr1	5712164	T-C	HET
SBS	Chr1	7612605	A-G	HET
SBS	Chr10	2194088	C-T	Homo
SBS	Chr11	12866099	C-T	Homo
SBS	Chr11	15180057	G-A	Homo
SBS	Chr11	18139043	G-A	HET
SBS	Chr11	7587452	G-A	HET
SBS	Chr12	13818680	G-C	Homo
SBS	Chr12	14448089	C-T	Homo
SBS	Chr12	8362675	G-A	Homo
SBS	Chr2	20991788	T-C	HET
SBS	Chr2	31832167	A-G	HET
SBS	Chr3	30740340	G-A	Homo
SBS	Chr3	31182964	C-A	HET
SBS	Chr4	3307334	A-T	HET
SBS	Chr5	14040072	A-G	Homo
SBS	Chr6	2421030	C-T	Homo
SBS	Chr9	16039237	T-C	Homo
SBS	Chr9	4629123	C-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	287439	287452	13
Deletion	Chr3	799932	799934	2
Deletion	Chr7	6649426	6649427	1
Deletion	Chr4	7619978	7619979	1
Deletion	Chr4	7997173	7997175	2
Deletion	Chr2	10204281	10204286	5
Deletion	Chr6	12431663	12431665	2
Deletion	Chr7	12971904	12971905	1
Deletion	Chr5	17002348	17002357	9
Deletion	Chr6	17141107	17141108	1
Deletion	Chr6	19850157	19850163	6
Deletion	Chr4	22407314	22407322	8
Deletion	Chr6	23061685	23061689	4
Deletion	Chr7	24144354	24144355	1
Deletion	Chr12	24837001	24883000	45999	5
Deletion	Chr4	26711965	26711981	16
Deletion	Chr1	33438670	33438671	1	LOC_Os01g57810
Deletion	Chr2	34129325	34129332	7

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	224725	224726	2
Insertion	Chr2	23009733	23009733	1
Insertion	Chr2	27283855	27283855	1
Insertion	Chr3	22923086	22923086	1
Insertion	Chr5	29227367	29227368	2
Insertion	Chr5	5230811	5230816	6
Insertion	Chr6	18875118	18875118	1
Insertion	Chr6	27543036	27543036	1
Insertion	Chr8	16212030	16212031	2
Insertion	Chr9	219265	219265	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	28272994	28324985
Inversion	Chr2	28273008	28324995
Inversion	Chr1	30628832	30955776	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	84922	Chr6	22815088
Translocation	Chr12	4365545	Chr2	30232278	2
Translocation	Chr11	9435838	Chr4	29789906
Translocation	Chr10	10726081	Chr6	15985407
Translocation	Chr11	10823999	Chr3	7798423	2
Translocation	Chr11	10824005	Chr3	7798201	2
Translocation	Chr11	15094758	Chr1	12471727
Translocation	Chr12	16244380	Chr4	31091369	2
Translocation	Chr12	16244385	Chr4	31090897	2
Translocation	Chr10	22550422	Chr1	2473794
Translocation	Chr5	27266540	Chr3	7407575

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