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Mutant Information

Mutant Name	FN1720-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1720-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11452618	C-G	Homo
SBS	Chr1	26257683	G-T	Homo
SBS	Chr1	35843453	C-T	HET
SBS	Chr2	407044	G-A	HET
SBS	Chr2	19498208	C-T	HET
SBS	Chr2	26158459	A-G	HET
SBS	Chr3	15403024	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26930
SBS	Chr3	20875023	A-G	HET
SBS	Chr3	23983683	G-A	HET
SBS	Chr3	34161281	C-T	HET
SBS	Chr4	6179922	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g11320
SBS	Chr4	7325159	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g13220
SBS	Chr4	16511171	G-A	HET
SBS	Chr4	18652903	C-T	HET
SBS	Chr6	22841109	G-A	HET
SBS	Chr7	6368225	C-G	Homo
SBS	Chr7	8834884	C-T	Homo
SBS	Chr7	20129219	T-C	Homo
SBS	Chr7	21961296	C-T	Homo
SBS	Chr9	3432699	C-T	HET
SBS	Chr9	19313314	A-T	HET
SBS	Chr10	20894606	G-A	Homo
SBS	Chr11	13011144	T-C	Homo
SBS	Chr11	13769386	G-A	Homo
SBS	Chr11	18327763	G-A	HET
SBS	Chr11	23684821	C-T	Homo
SBS	Chr12	2703069	A-T	HET
SBS	Chr12	5480418	A-T	Homo
SBS	Chr12	12446415	C-T	Homo

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	578016	578018	2	LOC_Os12g01970
Deletion	Chr11	5533881	5533894	13	LOC_Os11g10200
Deletion	Chr4	5548338	5548339	1	LOC_Os04g10270
Deletion	Chr2	10074660	10074661	1
Deletion	Chr4	11535148	11535155	7
Deletion	Chr4	11655905	11655906	1
Deletion	Chr12	12005807	12005808	1
Deletion	Chr2	12399478	12399483	5
Deletion	Chr7	12617990	12617993	3
Deletion	Chr6	12784335	12784363	28
Deletion	Chr7	14727517	14727530	13
Deletion	Chr4	14874453	14874463	10
Deletion	Chr4	14949834	14949836	2	LOC_Os04g25780
Deletion	Chr7	16521466	16521474	8
Deletion	Chr1	16943512	16943667	155
Deletion	Chr6	17691025	17691028	3
Deletion	Chr11	18303230	18303231	1	LOC_Os11g31360
Deletion	Chr8	18631487	18631488	1
Deletion	Chr2	18793755	18793881	126
Deletion	Chr8	24943645	24943658	13
Deletion	Chr12	25219459	25219464	5
Deletion	Chr3	30156671	30156673	2
Deletion	Chr6	30296001	30420000	123999	21
Deletion	Chr6	30431001	30459000	27999	6
Deletion	Chr6	30464001	30501000	36999	6
Deletion	Chr1	33792598	33792599	1	LOC_Os01g58459

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	16895887	16895887	1
Insertion	Chr3	14163150	14163151	2
Insertion	Chr4	4825104	4825104	1
Insertion	Chr5	27908212	27908285	74
Insertion	Chr6	3207695	3207700	6	LOC_Os06g06802
Insertion	Chr9	7057797	7057798	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3473391	3473707	LOC_Os02g06890
Inversion	Chr5	4461693	4461945	LOC_Os05g08170
Inversion	Chr5	21591995	21592204	LOC_Os05g36960
Inversion	Chr6	22483265	22521128
Inversion	Chr5	26586696	26586848	LOC_Os05g45880
Inversion	Chr2	35045157	35045484	LOC_Os02g57200

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	17244366	Chr9	9429104

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