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Mutant Information

Mutant Name	FN1721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1721-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1110367	G-A	HET
SBS	Chr1	12238006	T-C	Homo
SBS	Chr1	2239544	A-T	HET
SBS	Chr1	22599714	A-G	Homo
SBS	Chr1	25992713	C-T	Homo
SBS	Chr1	28683209	A-T	HET
SBS	Chr1	34624852	T-C	HET
SBS	Chr1	7177715	C-A	HET
SBS	Chr10	17396598	G-A	Homo
SBS	Chr11	23998869	G-A	HET
SBS	Chr2	15861152	C-T	HET
SBS	Chr2	26024647	T-C	HET
SBS	Chr2	27943576	G-A	HET
SBS	Chr3	13029375	T-C	Homo
SBS	Chr3	1596307	G-A	Homo
SBS	Chr3	1596309	G-A	Homo
SBS	Chr3	18857639	G-C	HET
SBS	Chr4	15222552	G-A	HET
SBS	Chr4	1938709	G-A	HET
SBS	Chr4	20528984	T-C	HET
SBS	Chr4	23018922	T-A	HET
SBS	Chr4	5219199	T-A	Homo
SBS	Chr5	20951889	G-A	Homo
SBS	Chr6	29225553	C-T	HET
SBS	Chr6	5439785	A-G	Homo
SBS	Chr7	10470037	C-T	Homo
SBS	Chr7	17302413	G-A	Homo
SBS	Chr7	22689704	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g37830
SBS	Chr7	9625297	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g16430
SBS	Chr8	628917	G-A	Homo
SBS	Chr9	13506145	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22350

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2804167	2804169	2
Deletion	Chr8	3537919	3537925	6
Deletion	Chr10	3832828	3832829	1	LOC_Os10g07270
Deletion	Chr6	8964815	8964816	1
Deletion	Chr10	9789834	9789956	122
Deletion	Chr9	10802927	10802929	2
Deletion	Chr7	11119148	11119149	1
Deletion	Chr7	11798568	11798569	1	LOC_Os07g20430
Deletion	Chr11	13432868	13432869	1
Deletion	Chr1	14160523	14160524	1
Deletion	Chr12	15142521	15142533	12
Deletion	Chr3	15944538	15944539	1
Deletion	Chr1	16191017	16191024	7
Deletion	Chr8	23544749	23544750	1
Deletion	Chr11	28993873	28993878	5
Deletion	Chr1	29609825	29609828	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	22241343	22241354	12
Insertion	Chr5	29941875	29941877	3
Insertion	Chr6	10986230	10986230	1
Insertion	Chr7	6831277	6831322	46
Insertion	Chr9	18313692	18313697	6

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6903691	6904095	LOC_Os10g12400
Inversion	Chr3	16194252	16194681
Inversion	Chr8	19574580	19575063	2
Inversion	Chr11	27837760	28788687

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8406220	Chr6	11805215
Translocation	Chr11	14837725	Chr4	256145	LOC_Os11g25980
Translocation	Chr11	14837726	Chr4	28522725	2

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