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Mutant Information

Mutant Name	FN1722-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1722-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13178042	G-C	HET
SBS	Chr1	23259270	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g41070
SBS	Chr10	12386668	C-T	HET
SBS	Chr10	2010528	T-A	HET
SBS	Chr10	4625208	G-A	HET
SBS	Chr11	1044594	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03000
SBS	Chr11	15648531	G-A	HET
SBS	Chr11	27835446	G-A	HET
SBS	Chr11	6295651	C-T	HET
SBS	Chr2	1186988	C-T	HET
SBS	Chr2	6023477	A-C	HET
SBS	Chr3	17158642	G-T	HET
SBS	Chr3	22858297	T-A	HET
SBS	Chr3	35629597	A-G	HET
SBS	Chr3	7579543	C-T	HET
SBS	Chr4	1432329	A-G	Homo
SBS	Chr4	3101846	C-T	HET
SBS	Chr5	12611974	A-T	HET
SBS	Chr6	11825294	G-A	Homo
SBS	Chr6	20484510	G-T	HET
SBS	Chr6	20484512	C-G	HET
SBS	Chr6	3661683	C-A	HET
SBS	Chr6	8923229	T-A	Homo
SBS	Chr7	16577663	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28370
SBS	Chr7	2069121	C-T	HET
SBS	Chr8	23008404	G-A	Homo
SBS	Chr8	8254617	A-G	HET
SBS	Chr8	8774924	G-T	HET
SBS	Chr9	5449081	T-C	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	4794812	4794813	1
Deletion	Chr6	9528654	9528663	9
Deletion	Chr12	10060905	10060912	7	LOC_Os12g17550
Deletion	Chr11	11359563	11359564	1
Deletion	Chr12	14460776	14460778	2
Deletion	Chr4	17552627	17552632	5
Deletion	Chr8	18117748	18117750	2	LOC_Os08g29550
Deletion	Chr2	21412152	21412153	1	LOC_Os02g35590

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	8031873	8031873	1
Insertion	Chr5	20519962	20519963	2
Insertion	Chr7	21097155	21097157	3
Insertion	Chr8	2824391	2824391	1	LOC_Os08g05360

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2307507	2531481	2
Inversion	Chr6	2307519	2531578	2
Inversion	Chr2	15874433	15874772	LOC_Os02g27000
Inversion	Chr6	17621307	17621478
Inversion	Chr2	20502787	20738714	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6515523	Chr2	20921424
Translocation	Chr9	6527821	Chr2	20740645	2
Translocation	Chr12	24606942	Chr5	2957569

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