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Mutant Information

Mutant Name	FN1723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1723-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3438703	T-C	HET
SBS	Chr1	3438734	G-T	HET
SBS	Chr10	17221464	T-C	HET
SBS	Chr11	13552294	G-A	HET
SBS	Chr11	14765388	G-A	HET
SBS	Chr11	14765389	G-A	HET
SBS	Chr11	16948558	A-G	HET
SBS	Chr11	7480595	G-T	Homo
SBS	Chr12	7685252	A-C	HET
SBS	Chr2	29528612	C-T	Homo
SBS	Chr2	4225830	G-A	Homo
SBS	Chr2	5868940	G-A	HET
SBS	Chr2	7393273	A-G	HET
SBS	Chr3	11127483	C-T	HET
SBS	Chr3	12564636	G-A	HET
SBS	Chr3	2058157	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g04430
SBS	Chr3	31683346	G-T	HET
SBS	Chr4	22738480	G-A	HET
SBS	Chr4	23381239	G-A	HET
SBS	Chr4	2420233	G-T	HET
SBS	Chr4	26828095	G-A	HET
SBS	Chr5	11595384	G-A	HET
SBS	Chr5	28600887	T-C	HET
SBS	Chr5	4179237	G-T	HET
SBS	Chr5	5154448	C-A	HET
SBS	Chr6	20206778	C-T	Homo
SBS	Chr7	21951901	C-T	HET
SBS	Chr7	25248299	C-T	HET
SBS	Chr7	25248300	A-G	HET
SBS	Chr7	28273264	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47290
SBS	Chr7	6547104	T-C	HET
SBS	Chr8	15523497	G-A	Homo
SBS	Chr8	5847228	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10080
SBS	Chr9	717160	T-G	Homo

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	562993	563001	8
Deletion	Chr9	1903109	1903128	19
Deletion	Chr5	5400166	5400167	1
Deletion	Chr7	5848058	5848060	2
Deletion	Chr9	6163948	6163949	1
Deletion	Chr7	7686211	7686213	2
Deletion	Chr8	8364104	8364107	3
Deletion	Chr9	8607303	8607306	3
Deletion	Chr4	8643807	8643810	3
Deletion	Chr9	8658001	8679000	20999	3
Deletion	Chr7	9373866	9373867	1
Deletion	Chr2	13153043	13153046	3
Deletion	Chr6	13377033	13377037	4
Deletion	Chr3	13809001	13834000	24999	4
Deletion	Chr3	16885951	16885952	1
Deletion	Chr5	19255759	19255763	4	LOC_Os05g32880
Deletion	Chr5	21487183	21487188	5
Deletion	Chr1	24560779	24560782	3	LOC_Os01g43050
Deletion	Chr3	26036210	26036222	12
Deletion	Chr6	27503001	27535000	31999	3
Deletion	Chr6	27544001	27620000	75999	10
Deletion	Chr1	27665807	27665809	2
Deletion	Chr2	27981742	27981749	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	14383775	14383776	2
Insertion	Chr8	25712905	25712906	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	20300902	20301053	LOC_Os06g34910

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4757291	Chr8	10071806
Translocation	Chr5	9585135	Chr1	24672367
Translocation	Chr5	9585149	Chr1	24673682
Translocation	Chr9	11528086	Chr1	28008355
Translocation	Chr9	11528308	Chr1	28008360
Translocation	Chr11	27416062	Chr9	22016151
Translocation	Chr6	27622005	Chr5	5379407
Translocation	Chr6	27622535	Chr5	5379378	LOC_Os06g45630

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