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Mutant Information

Mutant Name	FN1724-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1724-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4521761	T-C	HET
SBS	Chr2	4531548	G-A	HET
SBS	Chr2	6477642	G-A	HET
SBS	Chr2	30621811	T-C	HET
SBS	Chr3	3109330	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g06190
SBS	Chr3	12879956	T-C	Homo
SBS	Chr3	18094849	C-T	Homo
SBS	Chr3	20835896	C-T	Homo
SBS	Chr3	29228147	A-T	HET
SBS	Chr4	7784051	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g13930
SBS	Chr4	11771589	A-T	Homo
SBS	Chr5	8180116	C-G	HET
SBS	Chr5	10516682	A-G	Homo
SBS	Chr5	17677799	C-A	HET
SBS	Chr5	21085222	T-A	HET
SBS	Chr6	7231358	G-A	HET
SBS	Chr7	15908065	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g27340
SBS	Chr7	16483592	T-G	HET
SBS	Chr8	20312049	T-C	Homo
SBS	Chr9	5234579	G-A	HET
SBS	Chr9	22082422	A-G	HET
SBS	Chr10	2213852	T-C	HET
SBS	Chr11	10719913	G-C	Homo
SBS	Chr11	21258125	C-A	HET
SBS	Chr11	24974513	C-T	HET
SBS	Chr12	23212170	A-T	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr2	4743465	4743473	8
Deletion	Chr3	14264772	14264791	19
Deletion	Chr3	18183649	18183651	2
Deletion	Chr5	21917939	21917947	8
Deletion	Chr2	24169914	24169915	1
Deletion	Chr4	25902121	25902122	1
Deletion	Chr5	28810036	28810037	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	32311438	32311439	2
Insertion	Chr1	2956499	2956541	43
Insertion	Chr4	18865917	18865952	36
Insertion	Chr7	10122396	10122396	1
Insertion	Chr8	7532153	7532153	1
Insertion	Chr9	16146205	16146218	14
Insertion	Chr12	11575371	11575371	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20411795	20747828	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2844517	Chr2	35427869	2
Translocation	Chr12	3208358	Chr8	5461394
Translocation	Chr12	3208365	Chr8	5463069
Translocation	Chr9	13454063	Chr3	25402470	2
Translocation	Chr7	22921289	Chr3	2843982	2
Translocation	Chr12	23066819	Chr3	30031560	LOC_Os12g37570
Translocation	Chr12	23066822	Chr3	30044725	LOC_Os12g37570
Translocation	Chr6	27612765	Chr2	20314263	2
Translocation	Chr4	34654513	Chr2	35416619	2
Translocation	Chr4	34673026	Chr3	2844495	2

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