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Mutant Information

Mutant Name	FN1725-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1725-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11702985	C-T	HET
SBS	Chr1	40100881	C-A	HET
SBS	Chr10	1432691	A-T	HET
SBS	Chr10	20127937	C-A	HET
SBS	Chr10	22109199	A-T	HET
SBS	Chr10	5582311	C-T	HET
SBS	Chr11	26720042	G-A	Homo
SBS	Chr12	20101798	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33230
SBS	Chr2	16339138	A-G	HET	SPLICE_SITE_DONOR	LOC_Os02g27590
SBS	Chr2	17054934	C-A	HET
SBS	Chr2	19024847	G-A	HET
SBS	Chr2	30018487	T-C	HET
SBS	Chr2	5699635	C-A	HET
SBS	Chr3	12389148	T-A	HET
SBS	Chr3	13293487	T-C	HET
SBS	Chr4	14696968	C-T	HET
SBS	Chr4	1599128	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03630
SBS	Chr4	25813436	C-T	HET
SBS	Chr5	2441925	G-A	HET
SBS	Chr5	9034713	A-T	HET
SBS	Chr5	9464224	T-A	HET
SBS	Chr5	9464225	T-A	HET
SBS	Chr5	9464667	A-T	HET
SBS	Chr6	16128890	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g28350
SBS	Chr6	26931165	T-C	Homo
SBS	Chr6	9253267	G-A	HET
SBS	Chr7	15327560	G-A	HET
SBS	Chr7	28340584	T-C	HET
SBS	Chr7	4842602	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09240
SBS	Chr7	6181206	G-A	HET
SBS	Chr8	15200926	G-A	Homo
SBS	Chr8	25663810	C-T	Homo
SBS	Chr8	6327740	T-C	HET
SBS	Chr9	20824118	G-A	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	717595	717605	10
Deletion	Chr12	1467510	1467513	3
Deletion	Chr5	2046737	2046739	2
Deletion	Chr3	2245799	2245802	3
Deletion	Chr6	2400540	2400545	5
Deletion	Chr6	3719822	3719823	1
Deletion	Chr3	9457454	9457455	1
Deletion	Chr5	9833745	9833748	3
Deletion	Chr10	11390985	11390986	1
Deletion	Chr3	12680916	12680928	12
Deletion	Chr9	14840170	14840171	1
Deletion	Chr10	20595635	20595641	6	LOC_Os10g38600
Deletion	Chr3	24211307	24211321	14
Deletion	Chr5	26489299	26489309	10
Deletion	Chr11	26593001	26618000	24999	3
Deletion	Chr5	28675346	28675354	8
Deletion	Chr6	30012876	30012877	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	28619095	28619096	2
Insertion	Chr2	9009052	9009072	21
Insertion	Chr3	25941275	25941278	4
Insertion	Chr3	6003927	6003927	1
Insertion	Chr4	23398050	23398050	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5223777	5224149
Inversion	Chr6	25377864	25381013	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8660447	Chr3	24075322
Translocation	Chr7	15462217	Chr6	31147043
Translocation	Chr12	16335312	Chr7	3932820	2
Translocation	Chr12	19763492	Chr5	28571090
Translocation	Chr7	20019099	Chr1	28689112	2
Translocation	Chr7	20019125	Chr1	28690143	2
Translocation	Chr7	21040626	Chr5	15752963

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