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Mutant Information

Mutant Name	FN1726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1726-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (40% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32477719	T-G	HET
SBS	Chr11	25902084	T-A	HET
SBS	Chr11	8415368	A-C	HET
SBS	Chr12	2976376	C-T	Homo
SBS	Chr2	26304188	T-G	HET
SBS	Chr3	23112967	C-T	Homo
SBS	Chr3	28248556	C-T	HET
SBS	Chr3	8672382	C-T	HET
SBS	Chr4	32735243	C-G	HET
SBS	Chr4	9627780	C-T	HET
SBS	Chr5	7560941	G-A	HET
SBS	Chr6	8447650	C-A	HET
SBS	Chr7	19044128	T-C	Homo
SBS	Chr7	19156138	C-T	Homo
SBS	Chr8	18054338	A-G	Homo
SBS	Chr8	18679556	A-T	Homo
SBS	Chr9	14586701	G-C	HET

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	6126392	6126393	1
Deletion	Chr7	8551787	8551860	73
Deletion	Chr10	12829286	12829288	2
Deletion	Chr5	18706226	18706251	25
Deletion	Chr12	22917722	22917736	14
Deletion	Chr1	36175064	36175066	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26582459	26582460	2
Insertion	Chr1	39310713	39310714	2
Insertion	Chr10	10543218	10543283	66
Insertion	Chr10	6396620	6396620	1
Insertion	Chr11	27067876	27067876	1	LOC_Os11g44730
Insertion	Chr2	33278657	33278659	3
Insertion	Chr2	4282154	4282155	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11292149	11292377
Inversion	Chr12	26198690	26199231
Inversion	Chr2	35412875	35413116

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3630454	Chr2	24410404	2
Translocation	Chr11	14188802	Chr1	31791773
Translocation	Chr11	17008485	Chr1	39907007	LOC_Os11g29330