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Mutant Information

Mutant Name	FN1727-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1727-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Short (Between 25% and 74%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1121447	C-T	HET
SBS	Chr1	12548368	T-C	HET
SBS	Chr1	40261020	A-G	HET
SBS	Chr10	15761109	G-T	Homo
SBS	Chr10	7074130	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12690
SBS	Chr10	9303056	C-A	Homo
SBS	Chr11	18804232	G-A	Homo
SBS	Chr11	21255017	T-A	Homo
SBS	Chr11	24758033	G-A	Homo
SBS	Chr11	26600729	G-A	HET
SBS	Chr12	9791088	C-T	HET
SBS	Chr2	10199560	T-A	HET
SBS	Chr2	12085177	G-A	HET
SBS	Chr3	19953160	A-C	HET
SBS	Chr4	2466664	C-T	HET
SBS	Chr4	31401153	C-G	HET
SBS	Chr4	6709065	C-T	Homo
SBS	Chr4	6879045	G-C	Homo
SBS	Chr4	7087190	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g12830
SBS	Chr5	6540528	A-T	Homo
SBS	Chr6	29658673	C-T	HET
SBS	Chr6	702264	A-G	HET
SBS	Chr8	12033638	A-T	Homo
SBS	Chr8	1554118	C-T	HET
SBS	Chr8	8444586	C-T	Homo
SBS	Chr9	20382145	C-A	Homo

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2483701	2483703	2
Deletion	Chr9	3885365	3885367	2
Deletion	Chr3	4459429	4459430	1
Deletion	Chr10	7492270	7492274	4
Deletion	Chr4	7856277	7856280	3
Deletion	Chr10	9869261	9869275	14
Deletion	Chr3	11657199	11657211	12
Deletion	Chr2	12138001	12313000	174999	25
Deletion	Chr11	16629562	16629563	1
Deletion	Chr7	28995505	28995506	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14351767	14351772	6
Insertion	Chr1	7232160	7232185	26
Insertion	Chr10	8162696	8162696	1
Insertion	Chr11	14263808	14263813	6
Insertion	Chr11	6663889	6663889	1
Insertion	Chr7	23024484	23024484	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17358152	18014671	2
Inversion	Chr1	17358159	18014672	2
Inversion	Chr2	27773379	27773815	LOC_Os02g45660

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8767726	Chr4	11225651
Translocation	Chr12	9135216	Chr6	10364027	2
Translocation	Chr11	12699649	Chr7	14859324	LOC_Os11g22130
Translocation	Chr10	15469239	Chr2	26917496	2

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