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Mutant Information

Mutant Name	FN1730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1730-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype
SBS	Chr1	26274235	T-C	HET
SBS	Chr1	3384359	C-T	HET
SBS	Chr11	11788190	T-C	HET
SBS	Chr11	1407695	G-T	HET
SBS	Chr12	19926937	A-G	HET
SBS	Chr12	2004064	C-T	HET
SBS	Chr2	15475334	C-T	HET
SBS	Chr3	25913411	T-C	HET
SBS	Chr4	12082967	T-G	HET
SBS	Chr4	34375855	T-G	HET
SBS	Chr4	5642611	T-A	Homo
SBS	Chr4	7579943	T-G	HET
SBS	Chr5	19939095	C-T	HET
SBS	Chr5	25064616	G-A	HET
SBS	Chr5	29504987	A-G	HET
SBS	Chr5	9926923	C-T	HET
SBS	Chr6	9172724	T-C	Homo
SBS	Chr7	12629751	T-C	HET
SBS	Chr7	17364106	T-A	HET
SBS	Chr8	8639112	C-T	HET
SBS	Chr9	6795163	C-G	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1025001	1113000	87999	13
Deletion	Chr6	1233449	1233450	1
Deletion	Chr8	6760515	6760516	1
Deletion	Chr7	9380475	9380476	1
Deletion	Chr12	15481839	15481846	7
Deletion	Chr12	16716001	16763000	46999	6
Deletion	Chr1	24592001	24724000	131999	16
Deletion	Chr12	24664999	24665001	2
Deletion	Chr12	24684001	25050000	365999	53
Deletion	Chr1	25524001	25765000	240999	36
Deletion	Chr1	27222274	27222374	100
Deletion	Chr8	27827001	27846000	18999	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30576706	30576707	2
Insertion	Chr5	6999334	6999335	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13747578	13747778
Inversion	Chr1	19509112	19509312
Inversion	Chr1	24591310	25520742	2
Inversion	Chr1	25768542	25823819

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3230063	Chr6	18782151
Translocation	Chr11	4910767	Chr8	24407377
Translocation	Chr7	5986387	Chr3	22079408
Translocation	Chr7	5986401	Chr3	21960166	2
Translocation	Chr12	6179392	Chr1	13519314	2
Translocation	Chr12	8680177	Chr11	27721856
Translocation	Chr7	12539976	Chr4	27176722
Translocation	Chr9	16416533	Chr2	2673921
Translocation	Chr12	16715895	Chr4	31916543
Translocation	Chr12	17178986	Chr4	31872992
Translocation	Chr11	23661728	Chr6	19238242

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