Search Results
Mutant Information |
---|
Mutant Name | FN1731-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1731-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
|
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4931023 | G-A | HET | ||
SBS | Chr1 | 12083133 | T-C | Homo | ||
SBS | Chr1 | 28255900 | T-A | HET | ||
SBS | Chr1 | 40260068 | A-G | HET | ||
SBS | Chr1 | 42233095 | G-A | HET | ||
SBS | Chr2 | 11337626 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g19410 |
SBS | Chr2 | 30616445 | C-T | HET | ||
SBS | Chr3 | 13209659 | G-A | HET | ||
SBS | Chr3 | 20877082 | T-C | Homo | ||
SBS | Chr3 | 24467278 | C-A | Homo | ||
SBS | Chr4 | 4240473 | A-C | HET | ||
SBS | Chr4 | 4740731 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g08740 |
SBS | Chr4 | 10209059 | A-G | HET | ||
SBS | Chr4 | 11086174 | G-A | HET | ||
SBS | Chr4 | 11500778 | C-T | HET | ||
SBS | Chr5 | 12095360 | G-T | HET | ||
SBS | Chr5 | 22788576 | T-C | HET | ||
SBS | Chr6 | 10973086 | T-C | HET | ||
SBS | Chr6 | 17773444 | A-C | HET | ||
SBS | Chr7 | 12383563 | G-A | HET | ||
SBS | Chr7 | 15051753 | G-A | HET | ||
SBS | Chr7 | 16738630 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g28600 |
SBS | Chr8 | 9793436 | G-C | HET | ||
SBS | Chr8 | 13614828 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22630 |
SBS | Chr8 | 18667313 | C-A | HET | ||
SBS | Chr8 | 18667314 | G-A | HET | ||
SBS | Chr8 | 19190054 | C-A | HET | ||
SBS | Chr8 | 27102891 | C-T | HET | ||
SBS | Chr9 | 6735634 | G-C | Homo | ||
SBS | Chr9 | 16762492 | A-G | Homo | ||
SBS | Chr10 | 19418877 | C-T | Homo | ||
SBS | Chr11 | 11266808 | G-C | Homo |
Deletions: 8
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 1574425 | 1574426 | 2 | |
Insertion | Chr2 | 8678110 | 8678110 | 1 | |
Insertion | Chr7 | 19203833 | 19203833 | 1 | |
Insertion | Chr10 | 9144888 | 9144888 | 1 | LOC_Os10g18042 |
Insertion | Chr12 | 18822517 | 18822518 | 2 | LOC_Os12g31270 |
Inversions: 8
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 3007101 | 3834935 | LOC_Os04g05850 |
Inversion | Chr8 | 5966608 | 5967056 | LOC_Os08g10260 |
Inversion | Chr5 | 11790498 | 11790888 | LOC_Os05g20150 |
Inversion | Chr11 | 20114964 | 20115282 | |
Inversion | Chr7 | 25509360 | 25509512 | LOC_Os07g42620 |
Inversion | Chr7 | 25724585 | 25724995 | LOC_Os07g42950 |
Inversion | Chr1 | 27691175 | 27691454 | LOC_Os01g48320 |
Inversion | Chr1 | 29816710 | 29817162 | 2 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 5028129 | Chr6 | 27596158 | LOC_Os11g09370 |
Translocation | Chr8 | 14645205 | Chr4 | 3954961 | LOC_Os08g24260 |