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Mutant Information

Mutant Name	FN1731-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1731-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12083133	T-C	Homo
SBS	Chr1	28255900	T-A	HET
SBS	Chr1	40260068	A-G	HET
SBS	Chr1	42233095	G-A	HET
SBS	Chr1	4931023	G-A	HET
SBS	Chr10	19418877	C-T	Homo
SBS	Chr11	11266808	G-C	Homo
SBS	Chr2	11337626	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g19410
SBS	Chr2	30616445	C-T	HET
SBS	Chr3	13209659	G-A	HET
SBS	Chr3	20877082	T-C	Homo
SBS	Chr3	24467278	C-A	Homo
SBS	Chr4	10209059	A-G	HET
SBS	Chr4	11086174	G-A	HET
SBS	Chr4	11500778	C-T	HET
SBS	Chr4	4240473	A-C	HET
SBS	Chr4	4740731	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g08740
SBS	Chr5	12095360	G-T	HET
SBS	Chr5	22788576	T-C	HET
SBS	Chr6	10973086	T-C	HET
SBS	Chr6	17773444	A-C	HET
SBS	Chr7	12383563	G-A	HET
SBS	Chr7	15051753	G-A	HET
SBS	Chr7	16738630	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28600
SBS	Chr8	13614828	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22630
SBS	Chr8	18667313	C-A	HET
SBS	Chr8	18667314	G-A	HET
SBS	Chr8	19190054	C-A	HET
SBS	Chr8	27102891	C-T	HET
SBS	Chr8	9793436	G-C	HET
SBS	Chr9	16762492	A-G	Homo
SBS	Chr9	6735634	G-C	Homo

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr6	2317182	2317184	2
Deletion	Chr9	3255701	3255703	2
Deletion	Chr8	6810939	6810941	2
Deletion	Chr1	7726658	7726659	1
Deletion	Chr10	8093846	8093893	47
Deletion	Chr4	11483795	11483801	6
Deletion	Chr10	18804157	18804169	12
Deletion	Chr1	27404281	27404301	20

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9144888	9144888	1	LOC_Os10g18042
Insertion	Chr12	18822517	18822518	2	LOC_Os12g31270
Insertion	Chr2	8678110	8678110	1
Insertion	Chr7	19203833	19203833	1
Insertion	Chr8	1574425	1574426	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3007101	3834935	LOC_Os04g05850
Inversion	Chr8	5966608	5967056	LOC_Os08g10260
Inversion	Chr5	11790498	11790888	LOC_Os05g20150
Inversion	Chr11	20114964	20115282
Inversion	Chr7	25509360	25509512	LOC_Os07g42620
Inversion	Chr7	25724585	25724995	LOC_Os07g42950
Inversion	Chr1	27691175	27691454	LOC_Os01g48320
Inversion	Chr1	29816710	29817162	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5028129	Chr6	27596158	LOC_Os11g09370
Translocation	Chr8	14645205	Chr4	3954961	LOC_Os08g24260

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