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Mutant Information

Mutant Name	FN1732-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1732-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19647173	G-A	HET
SBS	Chr1	27342952	C-A	Homo
SBS	Chr1	37514821	T-A	HET
SBS	Chr1	38127055	G-T	HET
SBS	Chr1	38127056	A-T	HET
SBS	Chr1	41971434	C-T	HET
SBS	Chr10	8635110	C-A	HET
SBS	Chr10	9531009	T-C	HET
SBS	Chr11	14153429	G-A	HET
SBS	Chr11	26968522	C-T	HET
SBS	Chr12	15943162	T-G	Homo
SBS	Chr12	26462426	G-A	Homo
SBS	Chr12	9911182	T-G	Homo
SBS	Chr2	17877409	C-T	Homo
SBS	Chr2	28388712	C-G	HET
SBS	Chr3	10509087	G-A	HET
SBS	Chr3	18060948	C-A	Homo
SBS	Chr3	24955652	G-A	Homo
SBS	Chr4	14409074	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g25010
SBS	Chr4	22156746	T-C	Homo
SBS	Chr4	27457457	T-A	HET
SBS	Chr5	18334481	G-T	HET
SBS	Chr5	24448261	G-T	HET
SBS	Chr6	12389967	C-G	HET
SBS	Chr6	2695288	T-C	HET
SBS	Chr6	5434705	G-T	HET
SBS	Chr6	6556215	T-A	HET
SBS	Chr6	8902810	A-G	HET
SBS	Chr7	19377719	G-A	HET
SBS	Chr7	26724686	T-G	HET
SBS	Chr8	21705642	T-C	HET
SBS	Chr8	24221410	G-A	HET
SBS	Chr9	11163357	C-T	Homo
SBS	Chr9	19197664	C-G	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	5183669	5183675	6
Deletion	Chr10	5270822	5270825	3
Deletion	Chr7	5301251	5301270	19
Deletion	Chr8	5334133	5334136	3
Deletion	Chr8	5334409	5334411	2
Deletion	Chr5	7012683	7012694	11	LOC_Os05g12250
Deletion	Chr9	7517534	7517542	8
Deletion	Chr3	8341343	8341345	2	LOC_Os03g15250
Deletion	Chr2	8638965	8638966	1
Deletion	Chr11	10709390	10709393	3
Deletion	Chr8	12301342	12301356	14
Deletion	Chr12	17128007	17128008	1
Deletion	Chr6	18114166	18114170	4
Deletion	Chr3	19648163	19648164	1	LOC_Os03g35440
Deletion	Chr3	24650058	24650067	9
Deletion	Chr1	41886920	41886922	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1099682	1099687	6
Insertion	Chr12	5535492	5535492	1
Insertion	Chr2	26793248	26793253	6
Insertion	Chr5	29939605	29939611	7
Insertion	Chr7	13579336	13579336	1
Insertion	Chr8	11819534	11819534	1
Insertion	Chr9	1383674	1383674	1	LOC_Os09g02950
Insertion	Chr9	6699620	6699650	31

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16277988	16278251
Inversion	Chr5	25689941	25690372
Inversion	Chr7	27141971	27142272	LOC_Os07g45490
Inversion	Chr2	31419768	31420120

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	13219380	Chr2	11372330
Translocation	Chr4	33802611	Chr2	8585086

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