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Mutant Information

Mutant Name	FN1738-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1738-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 12

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17782756	G-A	HET
SBS	Chr1	36731244	C-T	HET
SBS	Chr1	4653144	C-T	HET
SBS	Chr1	8202017	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g14660
SBS	Chr10	11852717	C-T	HET
SBS	Chr10	14413963	C-T	HET
SBS	Chr11	15594534	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g27100
SBS	Chr4	11951335	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g21200
SBS	Chr5	11483626	C-T	Homo
SBS	Chr6	12443632	C-T	HET
SBS	Chr6	13084188	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22520
SBS	Chr9	22175779	T-C	HET

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	7267907	7267913	6
Deletion	Chr11	11732240	11732241	1	LOC_Os11g20300
Deletion	Chr6	14623495	14623496	1	LOC_Os06g24960
Deletion	Chr5	17400089	17400090	1
Deletion	Chr11	28607685	28607686	1
Deletion	Chr2	29853174	29853175	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13763923	13763923	1
Insertion	Chr12	11445091	11445091	1
Insertion	Chr12	22907764	22907765	2
Insertion	Chr2	9474275	9474322	48
Insertion	Chr5	10749728	10749733	6
Insertion	Chr7	20908930	20908930	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9986206	9986544	LOC_Os08g16370
Inversion	Chr12	22087690	22087880
Inversion	Chr1	41201608	41201830	LOC_Os01g71210

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3537019	Chr7	6594583
Translocation	Chr12	9802829	Chr6	7521453
Translocation	Chr9	10219608	Chr1	11150656	2
Translocation	Chr10	12384849	Chr9	9720964	2
Translocation	Chr12	20668443	Chr11	7096474	LOC_Os12g34104