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Mutant Information

Mutant Name	FN1739-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1739-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11088201	C-A	Homo
SBS	Chr1	35150823	G-A	HET
SBS	Chr10	534980	G-A	HET
SBS	Chr11	1008275	T-C	HET
SBS	Chr11	16401321	C-T	HET
SBS	Chr11	3901315	T-C	HET
SBS	Chr11	4272875	C-T	HET
SBS	Chr11	4440000	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08420
SBS	Chr11	9658132	G-T	HET
SBS	Chr12	6775202	G-A	HET
SBS	Chr2	28514415	G-A	HET
SBS	Chr3	3087048	A-G	HET
SBS	Chr4	10292766	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g18610
SBS	Chr4	33734701	T-G	HET
SBS	Chr5	12918775	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22770
SBS	Chr5	9584201	A-T	HET
SBS	Chr6	16716694	G-A	Homo	STOP_GAINED	LOC_Os06g29280
SBS	Chr6	26922513	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44590
SBS	Chr6	5918407	G-C	HET
SBS	Chr6	6172782	T-A	HET
SBS	Chr7	12542329	T-A	HET
SBS	Chr7	18986813	G-C	Homo
SBS	Chr7	7447494	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g12980
SBS	Chr8	10779077	G-A	HET
SBS	Chr8	2110557	C-T	HET
SBS	Chr8	8681189	C-T	HET
SBS	Chr9	19950493	C-G	Homo

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	471050	471055	5	LOC_Os12g01770
Deletion	Chr10	583828	583833	5	LOC_Os10g01920
Deletion	Chr3	3801001	3966000	164999	30
Deletion	Chr12	4273678	4273691	13	LOC_Os12g08410
Deletion	Chr3	6107620	6107740	120
Deletion	Chr10	6257641	6257642	1
Deletion	Chr7	10071021	10071030	9	LOC_Os07g17140
Deletion	Chr1	10098199	10098202	3
Deletion	Chr11	10810001	10834000	23999	3
Deletion	Chr4	18438001	18452000	13999	2
Deletion	Chr7	20634374	20634390	16
Deletion	Chr7	27635069	27635070	1
Deletion	Chr5	29936290	29936291	1
Deletion	Chr1	30076812	30076820	8	LOC_Os01g52330

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	13286266	13286267	2
Insertion	Chr1	19234766	19234766	1
Insertion	Chr10	2288239	2288302	64
Insertion	Chr12	22243474	22243474	1
Insertion	Chr12	5163967	5163975	9
Insertion	Chr3	10210956	10210956	1
Insertion	Chr3	22759606	22759620	15
Insertion	Chr5	4523476	4523476	1
Insertion	Chr6	9622238	9622239	2
Insertion	Chr7	18888839	18888839	1
Insertion	Chr8	20286334	20286367	34

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2094385	2094497
Inversion	Chr1	2603026	2603346	LOC_Os01g05500
Inversion	Chr10	10588753	10589088	LOC_Os10g20900
Inversion	Chr5	11208019	11208180
Inversion	Chr5	13141975	13142136	LOC_Os05g23050
Inversion	Chr2	18772930	18773278	LOC_Os02g31290
Inversion	Chr8	20156748	20157150	LOC_Os08g32540
Inversion	Chr12	23808122	23808452	LOC_Os12g38750
Inversion	Chr11	27724639	27792555	LOC_Os11g45820
Inversion	Chr6	28757032	28757193	LOC_Os06g47470
Inversion	Chr2	29808827	29809132
Inversion	Chr1	31169785	31170249

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	916018	Chr3	3015431	LOC_Os11g02778
Translocation	Chr9	7389228	Chr2	13965460
Translocation	Chr12	18566076	Chr5	10266652	2

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