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Mutant Information

Mutant Name	FN1740-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1740-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33197021	A-G	Homo
SBS	Chr10	19977425	C-T	HET
SBS	Chr10	3124202	G-A	HET
SBS	Chr10	351628	T-C	HET
SBS	Chr10	8468168	C-T	HET
SBS	Chr11	1882589	C-A	HET
SBS	Chr11	23628011	C-T	HET
SBS	Chr11	27355404	G-C	HET
SBS	Chr2	14835839	G-A	HET
SBS	Chr2	28371119	C-A	HET
SBS	Chr3	17003714	T-C	HET
SBS	Chr3	21355093	T-A	HET	STOP_GAINED	LOC_Os03g38470
SBS	Chr3	23722743	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42610
SBS	Chr3	28706209	C-T	HET
SBS	Chr4	31130322	T-C	Homo
SBS	Chr5	12395808	G-T	Homo
SBS	Chr5	14171272	G-A	Homo
SBS	Chr5	20374247	C-A	Homo
SBS	Chr6	14333153	C-T	HET
SBS	Chr6	9220330	G-T	HET
SBS	Chr7	27594717	G-A	HET
SBS	Chr9	2570702	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04820

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2789978	2789979	1
Deletion	Chr1	4665730	4665740	10
Deletion	Chr11	9629149	9629156	7	LOC_Os11g17290
Deletion	Chr5	11159129	11159130	1
Deletion	Chr12	11357329	11357336	7
Deletion	Chr12	11425474	11425489	15
Deletion	Chr8	12999065	12999068	3
Deletion	Chr10	15829476	15829477	1
Deletion	Chr4	16655304	16655312	8
Deletion	Chr6	19486185	19486186	1
Deletion	Chr7	20713593	20713605	12
Deletion	Chr12	26640453	26640455	2	LOC_Os12g42870
Deletion	Chr6	29604342	29604343	1
Deletion	Chr4	33402764	33402766	2
Deletion	Chr1	33738768	33738784	16

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6163345	6163346	2
Insertion	Chr10	4664907	4664907	1
Insertion	Chr4	26021038	26021039	2
Insertion	Chr6	16284209	16284210	2
Insertion	Chr7	28173836	28173836	1
Insertion	Chr9	18154257	18154262	6

Inversions: 20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	360274	360508	LOC_Os06g01610
Inversion	Chr12	516583	516845	LOC_Os12g01880
Inversion	Chr9	844810	845080	LOC_Os09g02150
Inversion	Chr6	6286897	6287000
Inversion	Chr8	6566842	6567160
Inversion	Chr1	8474689	8474919
Inversion	Chr2	8921375	8921542	LOC_Os02g15790
Inversion	Chr9	14993715	14994095	LOC_Os09g25070
Inversion	Chr9	15280969	15365205	2
Inversion	Chr9	15280970	15365203	2
Inversion	Chr7	19741969	19742318	LOC_Os07g33050
Inversion	Chr3	19927284	19927406
Inversion	Chr11	23920589	23920894
Inversion	Chr5	25966522	25966789
Inversion	Chr6	27808719	27808830
Inversion	Chr4	30144157	30144723
Inversion	Chr1	31014190	31014462
Inversion	Chr1	32002634	32002986	LOC_Os01g55540
Inversion	Chr3	33346825	33346930	LOC_Os03g58570
Inversion	Chr4	34374704	34375137

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5131294	Chr8	2543800	LOC_Os11g09590
Translocation	Chr7	11638243	Chr6	15056095	2
Translocation	Chr11	14282069	Chr3	24004048

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