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Mutant Information

Mutant Name	FN1741-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1741-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (13.33% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr3	3701257	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g07234
SBS	Chr3	14266148	T-C	Homo
SBS	Chr4	23200508	C-T	HET
SBS	Chr5	3675201	A-G	HET
SBS	Chr5	7733443	C-G	HET
SBS	Chr5	15415795	T-G	HET
SBS	Chr5	16888065	C-T	HET
SBS	Chr7	7800164	G-A	HET
SBS	Chr7	15199943	C-T	HET
SBS	Chr7	17957606	G-A	HET
SBS	Chr8	75811	C-A	HET
SBS	Chr8	16976001	A-T	Homo
SBS	Chr8	23469169	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g37140
SBS	Chr9	5820298	C-T	HET
SBS	Chr9	16761418	C-T	HET
SBS	Chr9	18974737	G-T	HET
SBS	Chr10	9100624	G-A	HET
SBS	Chr11	2097945	A-T	Homo
SBS	Chr11	14647895	C-T	HET	STOP_GAINED	LOC_Os11g25670
SBS	Chr11	26686658	C-T	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	206781	206792	11
Deletion	Chr6	2169001	2288000	118999	24
Deletion	Chr2	2208259	2208273	14
Deletion	Chr11	2670715	2670716	1
Deletion	Chr12	4133961	4133966	5	LOC_Os12g08110
Deletion	Chr11	5892177	5892184	7
Deletion	Chr7	6164362	6164380	18	LOC_Os07g11180
Deletion	Chr8	7767628	7767629	1
Deletion	Chr6	11011066	11011067	1	LOC_Os06g19350
Deletion	Chr12	12556379	12556382	3	LOC_Os12g22270
Deletion	Chr3	15377162	15377163	1
Deletion	Chr7	17111742	17111743	1
Deletion	Chr2	20056442	20056450	8
Deletion	Chr8	21335756	21335768	12
Deletion	Chr12	23214014	23214015	1
Deletion	Chr2	23428943	23428944	1
Deletion	Chr3	29939491	29939492	1	LOC_Os03g52150
Deletion	Chr1	33986494	33986495	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	3495549	3495552	4
Insertion	Chr4	3365572	3365572	1
Insertion	Chr4	7914316	7914319	4
Insertion	Chr10	9180137	9180142	6
Insertion	Chr12	11689811	11689811	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5295720	5296060
Inversion	Chr10	9026910	9791415	2
Inversion	Chr12	12383198	12578928	2
Inversion	Chr12	12383207	12428536	2
Inversion	Chr1	37959072	37959277

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1396393	Chr5	16713305	LOC_Os12g03520
Translocation	Chr12	12383156	Chr3	14265129
Translocation	Chr12	12578925	Chr3	14265400	LOC_Os12g22284
Translocation	Chr10	12950317	Chr8	14202217
Translocation	Chr10	18870671	Chr4	31455481	LOC_Os10g35294
Translocation	Chr10	18870840	Chr4	31455737	LOC_Os10g35294
Translocation	Chr11	19862053	Chr9	14949279	LOC_Os11g33970
Translocation	Chr4	24198568	Chr1	2769466
Translocation	Chr3	35300865	Chr2	16480438	2

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