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Mutant Information

Mutant Name	FN1744-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1744-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31719393	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g55120
SBS	Chr10	12653341	T-A	Homo
SBS	Chr11	4190645	G-A	Homo
SBS	Chr12	10667817	G-T	HET
SBS	Chr12	16061087	T-C	HET
SBS	Chr12	22568086	T-C	HET
SBS	Chr2	25863148	G-A	Homo
SBS	Chr2	31564165	G-A	HET
SBS	Chr4	1802870	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03950
SBS	Chr4	7884879	T-C	Homo
SBS	Chr4	8304933	C-A	HET
SBS	Chr5	8706149	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g15380
SBS	Chr7	27346487	G-A	HET
SBS	Chr8	14392053	G-A	HET
SBS	Chr9	17473367	G-A	HET	STOP_GAINED	LOC_Os09g28760
SBS	Chr9	6090306	G-T	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1078860	1078864	4
Deletion	Chr9	11090440	11090445	5	LOC_Os09g18090
Deletion	Chr12	11478879	11478881	2
Deletion	Chr4	15257015	15257018	3
Deletion	Chr12	16444986	16444987	1
Deletion	Chr12	22586453	22586455	2
Deletion	Chr5	24342370	24342372	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	20855059	20855059	1
Insertion	Chr9	12953712	12953712	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17043395	17043579
Inversion	Chr1	22452418	22452740	LOC_Os01g39810
Inversion	Chr5	22608229	22609069
Inversion	Chr1	39213860	39214189	LOC_Os01g67480

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	141191	Chr2	17016428
Translocation	Chr11	8193003	Chr3	32001617
Translocation	Chr6	27323101	Chr3	19216123