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Mutant Information

Mutant Name	FN1745-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1745-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	Homo
SBS	Chr1	21428496	C-G	HET
SBS	Chr1	25740756	C-T	HET
SBS	Chr1	36428938	G-A	Homo
SBS	Chr1	38121088	T-A	Homo
SBS	Chr1	8673298	C-T	Homo
SBS	Chr10	21315344	G-A	HET
SBS	Chr10	4409768	C-A	HET
SBS	Chr10	5793397	T-C	HET
SBS	Chr10	9736295	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g19120
SBS	Chr11	19215630	G-A	HET
SBS	Chr11	24909768	T-C	Homo
SBS	Chr12	13587308	G-T	HET
SBS	Chr12	13587309	A-T	HET
SBS	Chr12	1834684	C-T	Homo
SBS	Chr12	20909684	C-T	HET
SBS	Chr12	8813641	A-G	HET
SBS	Chr3	10352975	A-G	HET
SBS	Chr3	19808468	C-T	HET
SBS	Chr3	28413274	T-A	Homo
SBS	Chr4	17323104	G-C	Homo
SBS	Chr4	2698658	T-C	Homo
SBS	Chr4	3513493	A-T	HET
SBS	Chr5	11296794	G-A	Homo
SBS	Chr5	15305393	G-A	Homo
SBS	Chr5	28988896	G-A	HET
SBS	Chr6	21014105	C-T	Homo
SBS	Chr6	28304037	G-A	Homo
SBS	Chr6	30182936	T-C	Homo
SBS	Chr6	8430281	T-A	Homo
SBS	Chr7	13021238	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23090
SBS	Chr7	25876419	C-A	HET
SBS	Chr7	3961427	A-T	HET
SBS	Chr8	10921252	C-G	HET
SBS	Chr8	3005367	A-G	Homo
SBS	Chr9	15237250	C-T	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2449093	2449094	1
Deletion	Chr12	8270209	8270213	4
Deletion	Chr3	16007766	16007768	2
Deletion	Chr2	17933877	17933882	5
Deletion	Chr12	20169001	20205000	35999	8
Deletion	Chr6	26594184	26594188	4
Deletion	Chr5	29806517	29806519	2
Deletion	Chr6	30184219	30184228	9	LOC_Os06g49860
Deletion	Chr3	30461887	30461888	1
Deletion	Chr6	30506747	30506749	2
Deletion	Chr1	35180392	35180397	5
Deletion	Chr1	36689923	36689927	4	LOC_Os01g63290
Deletion	Chr1	41746810	41746812	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6635788	6635808	21
Insertion	Chr2	28185138	28185138	1
Insertion	Chr6	25246934	25246935	2
Insertion	Chr7	24372541	24372549	9
Insertion	Chr9	2171527	2171527	1

Inversions: 32

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1055292	1055560
Inversion	Chr3	2216203	2216421
Inversion	Chr6	2975611	2975744	LOC_Os06g06380
Inversion	Chr1	3468761	3469062	LOC_Os01g07350
Inversion	Chr7	3685202	3685394
Inversion	Chr6	4836222	4836677	2
Inversion	Chr2	5209922	5210082	LOC_Os02g10020
Inversion	Chr3	5962253	5962363	LOC_Os03g11510
Inversion	Chr7	6088637	6088847
Inversion	Chr3	6774351	6774474
Inversion	Chr3	7052180	7052613
Inversion	Chr10	10462324	10467358
Inversion	Chr10	10462326	10467364
Inversion	Chr3	10478672	10479080	LOC_Os03g18720
Inversion	Chr11	15980361	15980464	LOC_Os11g27760
Inversion	Chr11	17086511	17086799
Inversion	Chr8	17859058	17859423
Inversion	Chr7	19098570	19098809	LOC_Os07g32160
Inversion	Chr7	19288663	19288937	LOC_Os07g32420
Inversion	Chr1	20275174	20275328
Inversion	Chr1	21195065	21195196
Inversion	Chr9	21222338	21222502	LOC_Os09g36770
Inversion	Chr7	22889184	22889333	2
Inversion	Chr7	24666778	24667159	LOC_Os07g41200
Inversion	Chr5	26467526	26467758	2
Inversion	Chr5	26663917	26664230
Inversion	Chr6	27614936	27615092
Inversion	Chr2	28800820	28852568
Inversion	Chr2	32553286	32553606
Inversion	Chr4	34684766	34685003	LOC_Os04g58250
Inversion	Chr2	35728740	35729184	LOC_Os02g58410
Inversion	Chr1	39683051	39683260	LOC_Os01g68300

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7337585	Chr5	14772935	2
Translocation	Chr12	8582247	Chr1	19169623	2
Translocation	Chr2	9236367	Chr1	9625629	LOC_Os02g16240
Translocation	Chr7	16542927	Chr2	28800811
Translocation	Chr12	20757990	Chr9	17750447	2
Translocation	Chr12	20759698	Chr9	17750444	2
Translocation	Chr11	22579323	Chr8	3761938	LOC_Os11g38070

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