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Mutant Information

Mutant Name	FN1748-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1748-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr3	3442559	A-T	HET
SBS	Chr3	23123639	G-A	Homo
SBS	Chr3	25464215	G-A	HET
SBS	Chr3	28043010	G-A	Homo
SBS	Chr3	28228334	A-G	Homo
SBS	Chr4	755736	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02200
SBS	Chr4	2932031	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05730
SBS	Chr4	33326806	G-A	Homo
SBS	Chr5	10979085	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18910
SBS	Chr5	23541874	T-A	Homo
SBS	Chr6	6669648	G-A	HET
SBS	Chr6	12239388	C-T	HET
SBS	Chr6	16528883	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29000
SBS	Chr6	21381218	T-G	HET
SBS	Chr6	24040775	C-T	HET
SBS	Chr7	5604026	T-C	Homo
SBS	Chr7	6926373	T-C	HET
SBS	Chr8	2210844	C-G	HET
SBS	Chr8	6396211	C-G	Homo
SBS	Chr8	12324413	C-T	Homo
SBS	Chr9	4120059	G-A	HET
SBS	Chr10	9920790	G-A	Homo
SBS	Chr10	12229973	G-A	HET
SBS	Chr11	14041086	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24590
SBS	Chr11	21045317	C-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	430554	430556	2
Deletion	Chr5	571001	599000	27999	4
Deletion	Chr4	4559274	4559281	7
Deletion	Chr1	5493763	5493765	2
Deletion	Chr4	6068925	6068928	3
Deletion	Chr10	7049856	7049857	1
Deletion	Chr1	7971764	7971766	2
Deletion	Chr3	15487607	15487612	5
Deletion	Chr4	18103946	18103958	12
Deletion	Chr1	29773012	29773013	1
Deletion	Chr4	34068952	34068956	4
Deletion	Chr2	35484242	35484243	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	31784734	31784734	1
Insertion	Chr2	1078286	1078297	12
Insertion	Chr9	7214419	7214419	1
Insertion	Chr11	23250675	23250700	26
Insertion	Chr12	13935481	13935481	1

Inversions: 15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	719499	719806	LOC_Os08g02140
Inversion	Chr6	4580276	4580687
Inversion	Chr2	7523637	7523920
Inversion	Chr4	8258538	8258782
Inversion	Chr4	12661200	12661371
Inversion	Chr5	13270557	13270890	LOC_Os05g23250
Inversion	Chr12	16911611	16911825
Inversion	Chr5	17937701	17938059	LOC_Os05g30890
Inversion	Chr11	21764162	21764413
Inversion	Chr5	24297610	24297892
Inversion	Chr12	27147430	27147649	LOC_Os12g43700
Inversion	Chr2	28013272	28013548	LOC_Os02g45974
Inversion	Chr1	30073831	30073946
Inversion	Chr1	35029831	35029963
Inversion	Chr2	35190289	35190449	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8425377	Chr3	14801961	LOC_Os12g14720
Translocation	Chr6	10379641	Chr1	2481439	LOC_Os06g17880
Translocation	Chr11	17538825	Chr2	21868990	2
Translocation	Chr5	18985805	Chr2	3226637

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