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Mutant Information

Mutant Name	FN1749-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1749-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12403421	C-T	Homo
SBS	Chr1	20297732	G-A	Homo
SBS	Chr1	27999383	A-G	HET
SBS	Chr1	28224398	T-G	HET
SBS	Chr1	28558870	C-A	HET
SBS	Chr1	28720416	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g49980
SBS	Chr1	30834470	A-T	HET
SBS	Chr2	15093320	C-T	Homo
SBS	Chr2	18231471	T-A	Homo
SBS	Chr2	18233546	G-T	Homo
SBS	Chr3	34481605	T-A	HET
SBS	Chr4	13030639	T-A	HET
SBS	Chr4	19532859	C-A	HET
SBS	Chr5	19614243	T-A	HET
SBS	Chr5	25636699	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g44090
SBS	Chr5	28615259	G-A	HET
SBS	Chr6	3488633	T-C	Homo
SBS	Chr6	4773429	C-G	Homo
SBS	Chr6	14208582	C-A	Homo
SBS	Chr6	16008067	G-T	Homo
SBS	Chr7	14172978	G-A	HET
SBS	Chr8	3469694	A-T	HET
SBS	Chr9	4021510	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07900
SBS	Chr9	5370254	T-C	HET
SBS	Chr9	9795933	A-T	HET
SBS	Chr9	11953749	A-C	HET
SBS	Chr9	13644742	C-A	HET
SBS	Chr9	19728883	C-A	Homo
SBS	Chr10	2777775	C-A	HET
SBS	Chr11	11360468	T-G	Homo
SBS	Chr11	28452893	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47310
SBS	Chr12	14535197	G-A	Homo
SBS	Chr12	16390686	G-A	Homo
SBS	Chr12	16390687	G-A	Homo

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	683001	701000	17999	4
Deletion	Chr4	1683001	2083000	399999	58
Deletion	Chr2	1691001	1724000	32999	4
Deletion	Chr5	2106001	2148000	41999	4
Deletion	Chr1	2109201	2109202	1
Deletion	Chr5	2278001	2307000	28999	2
Deletion	Chr7	2822001	2888000	65999	10
Deletion	Chr10	4001001	4017000	15999	2
Deletion	Chr12	4572001	4612000	39999	4
Deletion	Chr4	4645001	4785000	139999	24
Deletion	Chr7	6629001	6660000	30999	4
Deletion	Chr7	6740001	6768000	27999	5
Deletion	Chr1	7835878	7835906	28
Deletion	Chr7	7953256	7953260	4
Deletion	Chr12	9275001	9292000	16999	5
Deletion	Chr11	10840001	10852000	11999	2
Deletion	Chr11	11175126	11175128	2
Deletion	Chr10	11450689	11450692	3	LOC_Os10g22164
Deletion	Chr11	11519683	11519701	18
Deletion	Chr1	11530001	11578000	47999	4
Deletion	Chr5	12555001	12581000	25999	2
Deletion	Chr12	12933001	12957000	23999	2
Deletion	Chr5	13336658	13336698	40
Deletion	Chr12	13505001	13531000	25999	4
Deletion	Chr5	14023001	14051000	27999	6
Deletion	Chr1	16567799	16567806	7
Deletion	Chr11	19231001	19285000	53999	7
Deletion	Chr9	20407001	20497000	89999	10
Deletion	Chr12	21394293	21394294	1
Deletion	Chr9	22472001	22501000	28999	3
Deletion	Chr2	23880001	23903000	22999	5
Deletion	Chr8	24497918	24497919	1	LOC_Os08g38740
Deletion	Chr6	24659001	24712000	52999	7
Deletion	Chr8	24682897	24682903	6
Deletion	Chr4	25094406	25094412	6
Deletion	Chr4	30055130	30055131	1
Deletion	Chr1	36690001	36714000	23999	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	836335	836336	2
Insertion	Chr11	9227366	9227367	2
Insertion	Chr11	19917166	19917167	2
Insertion	Chr2	7458562	7458566	5
Insertion	Chr4	11979838	11979838	1
Insertion	Chr12	6746755	6746760	6

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2594131	3292520
Inversion	Chr8	2594171	3292604
Inversion	Chr9	8301496	8301789
Inversion	Chr9	18381953	18382227	LOC_Os09g30200
Inversion	Chr9	21169670	21169857
Inversion	Chr11	24266602	24267019

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	77239	Chr4	2430861	LOC_Os07g01130
Translocation	Chr7	77246	Chr4	2430857	LOC_Os07g01130
Translocation	Chr12	9050771	Chr2	33237740	2
Translocation	Chr10	11150579	Chr7	1494654
Translocation	Chr7	25192596	Chr2	19585394	LOC_Os07g42080
Translocation	Chr12	25370427	Chr8	15270537

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