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Mutant Information

Mutant Name	FN1750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1750-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13219838	T-A	HET
SBS	Chr1	13814017	T-C	HET
SBS	Chr1	28333791	A-G	Homo
SBS	Chr1	29209257	C-G	Homo
SBS	Chr1	32331993	A-G	Homo
SBS	Chr1	41312718	C-G	HET
SBS	Chr10	12986176	A-T	Homo
SBS	Chr11	1359529	C-T	Homo
SBS	Chr11	1639233	T-C	HET
SBS	Chr11	21678684	A-T	Homo
SBS	Chr12	13865288	A-G	Homo
SBS	Chr12	16549891	A-G	Homo
SBS	Chr2	25144634	G-A	HET
SBS	Chr3	17440590	T-A	HET
SBS	Chr3	17728810	T-C	HET
SBS	Chr3	28732337	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g50350
SBS	Chr3	3210752	C-T	HET
SBS	Chr3	3314100	C-T	HET
SBS	Chr5	10379949	G-A	HET
SBS	Chr5	26848782	G-A	HET
SBS	Chr6	16571603	G-A	Homo
SBS	Chr6	30068602	A-T	HET
SBS	Chr6	859215	G-A	Homo
SBS	Chr7	18784038	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31630
SBS	Chr7	8023156	C-A	Homo
SBS	Chr8	10976936	C-T	Homo
SBS	Chr8	7809189	G-A	Homo
SBS	Chr9	492363	C-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	289001	311000	21999	7
Deletion	Chr2	1975760	1975762	2
Deletion	Chr10	3086853	3086861	8
Deletion	Chr8	8251609	8251618	9	LOC_Os08g13830
Deletion	Chr6	12678399	12678400	1
Deletion	Chr7	13685033	13685042	9
Deletion	Chr7	21366001	21432000	65999	12
Deletion	Chr4	23197288	23197290	2
Deletion	Chr8	24159560	24159562	2
Deletion	Chr8	25008821	25008825	4
Deletion	Chr11	25777949	25777951	2
Deletion	Chr2	26912808	26912897	89
Deletion	Chr1	30293654	30293655	1
Deletion	Chr1	38723269	38723270	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	29012015	29012046	32
Insertion	Chr12	17151733	17151733	1
Insertion	Chr4	15278204	15278204	1
Insertion	Chr6	5136666	5136736	71
Insertion	Chr7	23132989	23132989	1
Insertion	Chr9	2823796	2823796	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3947160	3947407
Inversion	Chr9	9598712	9598993
Inversion	Chr3	26204965	26205258	LOC_Os03g46330
Inversion	Chr3	31359539	31361876	LOC_Os03g55120
Inversion	Chr3	31361367	31361893
Inversion	Chr2	34537660	34537776
Inversion	Chr1	35348105	35348209	LOC_Os01g61080

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	288891	Chr4	25813140	LOC_Os08g01450
Translocation	Chr8	310608	Chr4	25813486
Translocation	Chr9	8228135	Chr5	8546812
Translocation	Chr8	10137903	Chr4	16536483	2
Translocation	Chr2	16489318	Chr1	26061172	2
Translocation	Chr4	16721413	Chr1	11769606
Translocation	Chr12	18411137	Chr1	25970914	2
Translocation	Chr10	20340739	Chr3	4087470	2
Translocation	Chr6	20501750	Chr1	11600013	2

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